Thermaerobacillus caldiproteolyticus: ISX45_13700
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Entry
ISX45_13700 CDS
T06899
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acai
Thermaerobacillus caldiproteolyticus
Pathway
acai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISX45_13700 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acai03019
]
ISX45_13700 (rnr)
03016 Transfer RNA biogenesis [BR:
acai03016
]
ISX45_13700 (rnr)
Enzymes [BR:
acai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ISX45_13700 (rnr)
Messenger RNA biogenesis [BR:
acai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ISX45_13700 (rnr)
Transfer RNA biogenesis [BR:
acai03016
]
Prokaryotic type
tRNA degradation factors
ISX45_13700 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QPA30619
LinkDB
All DBs
Position
complement(2712908..2715178)
Genome browser
AA seq
756 aa
AA seq
DB search
MEQSLVDRILAFMRDEAYKPLTVQELEEVFGITDAAEFKEFVKALVAMEEQGLVVRTRSN
RYGVPEKMNLVRGKVTGHAKGFAFVVPEDPTLDDIFIPPSELKNAMHGDTVLVRVSSQAS
GARKEGTIVRILERGVTEVVGTYTESRHFGFVIPDDKKIVNDIFIPKHAANGAVEGHKVV
VRLTTYPEGRISAEGEVIKILGHKNDPGVDILSIIHKHGLPLQFPEDVLAHANSIPDTIS
EEDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLDNGHYKLGVHIADVSHYVKEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEVNEHGEVVSHEIFQS
VIRTTERMTYSDVNKILVDKDEELRKKYEPLVPMFELMAELAEILRNKRMKRGAIDFDFK
EAKVLVDEDGKPYDVVLRERSVAERLIEEFMLLANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYIVKGTGNQIHPRALQEILEAVRGEPEEMVVSTVMLRSMKQARYDAE
SLGHYGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLINGQLDEQTQQKWAEKLPDIAEHAS
NMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYRYDERHYAMIGERTGKVYRIGDEITVRVINVNKDERIVDFEIVGMKGRRPKEAKRT
PLVIEGKKERKKSKNKKFYEDVPHLKAKKKKKKKKR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatcgctagtcgatcgaattttagcttttatgagagatgaagcgtacaagccg
ctaacggttcaagaattggaagaagtattcggtatcacagacgcagctgaatttaaagaa
ttcgttaaagcgcttgttgcgatggaagaacaagggcttgtcgtacgcacgaggagcaat
cgttacggcgtgccggaaaaaatgaatttagtgcgcggaaaagtcactggtcacgctaaa
ggatttgcgttcgttgttcccgaagacccgacacttgatgatatttttatcccgccttcc
gagttgaaaaacgcgatgcatggagatacggtgttagtgcgcgtgagctcacaagcgtcc
ggtgcacgcaaggaaggaacaattgttcgtattttagaacgcggcgtgacggaagtcgtg
ggcacatacacggaaagcagacattttggttttgtcattcctgacgacaaaaaaatcgtc
aatgacatttttattccgaagcatgcggcaaatggcgcggtagaaggacataaagttgtc
gtaagattaacgacatacccagaagggcggatcagtgccgaaggggaagtcatcaaaatc
ctcggccataaaaacgaccccggtgtcgatattttatcgatcattcataaacatggtctg
ccgcttcaatttccggaggatgtccttgctcatgctaacagcattccggatacgatttcg
gaagaagatttacaaggccgccgcgatttgcgcgaccaaatgattgtcaccatcgacgga
gaagacgcaaaagacttagacgatgccgtcactgtgacgaagctagacaacggtcactat
aaattaggggttcatatcgccgatgtgagccattatgtaaaagaaggctcgccgattgac
cgagaagcatatgaacgaggtacaagcgtctatttagtcgaccgcgttattccaatgatt
cctcaccgtctatcgaacggcatttgttcactcaacccgaaagtggatcggttgacgctt
tcatgcgaaatggaagttaatgaacatggcgaagtcgtcagccatgaaatttttcaaagt
gtcattcgtacaactgaacgcatgacgtattcggatgttaacaaaattcttgtcgataaa
gacgaagaattgcgcaaaaaatacgaaccgcttgtaccaatgtttgaactgatggccgaa
cttgcggaaattttacgcaataagcggatgaaacgcggcgcgatcgattttgattttaaa
gaagcaaaagtattagttgacgaagatggaaaaccgtacgacgttgtgttgcgtgaacgt
tcggtggctgaacgccttattgaggaatttatgctgcttgcgaatgaaacggtcgcagag
cacttccattggctgaacgtcccgtttatttaccgagttcatgaagatccaaaaccggaa
aaattgcagcgtttccttgaatttattacgaatttcggctatatcgttaaaggaacagga
aatcaaatccatccgcgtgcactgcaagaaattttagaagccgtacgcggcgaaccggaa
gaaatggttgtatcgaccgtcatgcttcgctcgatgaaacaagcgcgttacgatgcagag
agtctcggtcactatggactatccaccgacttttatacacattttacgtcaccgatccgc
cgttacccggatttaattgtccaccgtctcattcgcacgtatttaattaacggacaatta
gacgaacagacacaacaaaaatgggcggaaaagcttcctgatattgctgaacatgcttca
aatatggaacgccgtgctgttgaggcagagcgtgaaacggatgacttgaagaaaacagaa
tttatggaagacaaaatcggcatggagtttgacggaatcattagctcagtgacgaatttc
ggtttatttgtcgagctgccgaatacgattgaaggtcttgtccatgtcagctacttaaca
gatgactactaccgctatgacgagcgccattacgccatgatcggcgaacgaacaggaaaa
gtataccgcatcggcgacgaaatcactgttcgtgtcattaatgtcaacaaagatgaacgt
attgttgattttgaaatcgtcggcatgaaaggtcgtcgccccaaagaagcaaaacgaact
ccacttgtgattgaggggaaaaaagaacggaaaaaatcgaagaacaaaaaattttacgaa
gacgttccgcatttgaaagcgaaaaagaagaaaaagaagaagaaacgataa
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