KEGG   Aristolochia californica: 137935869
Entry
137935869         CDS       T10486                                 
Name
(RefSeq) THO complex subunit 3-like isoform X1
  KO
K12880  THO complex subunit 3
Organism
acak  Aristolochia californica
Pathway
acak03013  Nucleocytoplasmic transport
acak03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    137935869
  09122 Translation
   03013 Nucleocytoplasmic transport
    137935869
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acak03019]
    137935869
   03041 Spliceosome [BR:acak03041]
    137935869
Messenger RNA biogenesis [BR:acak03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     137935869
Spliceosome [BR:acak03041]
 Complex C
  Other components
   EJC/TREX
    137935869
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    137935869
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_Vps41 eIF2A Beta-prop_EML DSE1_N Beta-prop_EIPR1 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N TRM82_WD WD40_MABP1-WDR62_1st NBCH_WD40 Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd Beta-prop_WDR41 WDR90_beta-prop_4th PAC11 Beta-prop_ACSF4 CNH Beta-prop_Nup120_160 Beta-prop_WDR11_1st WD_LRWD1 Cytochrom_D1 DUF7099
Other DBs
NCBI-GeneID: 137935869
NCBI-ProteinID: XP_068636356
LinkDB
Position
Unknown
AA seq 405 aa
MGELKEKVSTLLLFPGCHKWRDKEYKQVMVFDCFLKAFLLSHDHSLPKGGRQPFFCLPTV
FQRLKALKVKNAPPSPQHLLRIASEIEEVAGMVDTAIPFKNLHSREYQGHKKKVHSVAWN
CTGVKVASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHPDLIATASGDK
TVRLWDARSGKCSQQVELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKAIHRRKFT
YEVNEIAWNTTGDVFFLTTGNGTLEVLDYPSLRAMHTLMAHTAGCYCIAIDPTGKHFAVG
SADSLVSLWDFSEMLCIRTFTKLEWPVRTVSFNYSGDYIASASEDLFIDISNVHTGRTVH
QIPCRAAMNSVEWNPKYNLLAYAGDDKNMYQVDEGVFRIFGFQSP
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgggggaattaaaggaaaaggtgagcacacttttgctttttcccggttgtcacaaatgg
agagacaaggagtacaagcaggtgatggtgtttgattgctttttgaaggcatttctcctt
tcacatgatcactctcttcctaaaggaggaagacaaccctttttttgcctcccaacagtt
tttcagagattgaaggcgttgaaggtcaaaaatgcacccccctctcctcaacatcttcta
cggatcgcttctgaaatagaggaagtcgctggaatggtggatacagcaatacccttcaaa
aatcttcacagcagagaatatcaaggtcataagaagaaggtgcattccgtggcatggaat
tgcaccggcgtgaaggtcgcttcaggttccgttgatcaaaccgctcgcgtttggcatatt
gagccgcatggccatggtaaggtcaaggacgttgagttgaaagggcacacagatagtgtt
gatcaactatgttgggatccaaagcaccctgatctgattgcaacagcctcaggggacaag
actgtgcgcctttgggatgctcgtagtggaaaatgctctcaacaggtggaactcagtggt
gaaaacatcaacatcacatacaaacctgatgggacacacatagctgttggaaacagggat
gatgagctaaccatattggatgttcgaaaatttaaagcaatccacaggcgcaagtttacc
tatgaggtaaatgagattgcttggaacactacaggggatgttttctttcttactactggg
aatggcacccttgaggttttggattacccatctcttcgagccatgcacacccttatggcc
catacagcaggatgctattgcattgcaatcgaccctactggaaaacactttgctgttggg
agtgctgattcattagtcagtctgtgggatttctctgagatgctttgcatacgtacattt
acgaaacttgaatggcctgttagaactgttagtttcaattattcgggtgattacatcgcc
tcagctagtgaagatctatttattgacatttccaatgttcatactgggcgaactgtgcat
caaattccttgtcgagctgcaatgaatagtgtggagtggaatcccaaatacaatttgctt
gcttatgccggagacgataagaacatgtaccaggttgatgaaggtgtgtttcgaatattt
ggctttcaaagtccgtaa

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