Aristolochia californica: 137935996
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Entry
137935996 CDS
T10486
Name
(GenBank) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137935996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acak03021
]
137935996
03019 Messenger RNA biogenesis [BR:
acak03019
]
137935996
Transcription machinery [BR:
acak03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137935996
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137935996
U7-dependent histone pre-mRNA processing factors
137935996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
INTS7_N
Motif
Other DBs
NCBI-GeneID:
137935996
NCBI-ProteinID:
XP_068636572
LinkDB
All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MVGMMAVNFKERTADLLKSAKFSEETPTKLKNLRPLKELIRQMDSSLLSDLVPLIMELQN
DHSSPVRKLLAEFIGEIGLKRSEFLPDMVPVLITFLKDAVPAVARQAITTGTGLFRHTFE
KIAIEGLFSGELEKSIEASWAWMLKFKDAVVPIAFQPGSDGVRLLAVRFIEVMVLLYTPD
PNGSSQPPLHLGYDGKLDTVGFDISWLRGGHPLLNVGQLAVEASQSLGLLLDQLRFPSLK
SLSNSIIIVLINSLSAIAKKRPAYYGHILPVLLSLDPSNSVVKGVPVAGANHALKNALMS
CLECSHPGVAPWRDRLLDALDSMNAGQKEASETSAQISSEPHSMKEEKLVIQSSEAAQIY
QVRKRSLTPEAKDLVEEDDLSSSSGKRVKVELVEDSTKELLHSCSISAREGVPSSGTPVS
TRDIDSGPVQQLVAMFGALVAQGDRAATSLEILISSISSDLLAEVVMANMRFLPPTCPQS
EEEALGGAGSVTPEPSLLSDILSLLNPQLAASRDTLQDGREEQHMETVTVATEIPACSAS
LALQGMEQGESDMASETNEVLTTNSEVPGLDPKACNMEIQDTVPGLDPKACNMEIQDTVE
VSYSSTVDTQGTNQDQATSAGDYVSEASSQKLAGSESNSSITSCQVLLPKMVAPVVYITE
EEKDNLQKLAFVRVVEAYKQIAFSGGSHIRFSLLAYLGAEYPLELDSWGLLQKHILADYL
NHEGHELTLRVLYRLYRDIEQDQDFFSSTTATSIYESFLLAVAETLRDSFPASDKSLSRL
LGEVPYLTKTVFKLLECLCSPGIDKKSGKESLSGDRVTQGLSAVWNLILLRPPIRDECLK
IALQSTIHLWEEVRMKAIRLVANKLYPMLCISQKIGDFASEMLFSVVNNSHVSESTSAEE
SSNPGQKDHDMERHVSGGLSTTSGPSKEPVSDTSNQLASARSISSSGAAEAQRCMSLYFA
LCTKKHSLLRQIFVIYKDLPKTAKQAVHRHIPILVRTIGSSSELLAIISDSPDGSESLLM
QVLHTLTEGAVPPPELVLTVRKLYESKLKDVEILIPILASLSKDEVLPIFPQLVNLPSDK
FQAAVAKLLQGLPHASPSLTPAELLIAIHGIDPERDGIPLKKVMDACSACFEQRQVFTQQ
VFAKALNQLVEQIPLPLLFMRTVIQAIGVFPALVDFIMEILSRLVSKQIWKYPKLWVGFL
KCTLQTKPQSFSVLLQLPAVQLENALNKNPALRSPLVAYANQPNLRSSLPRSTLMVLGLA
QEPQSQPQSQMQTADPANSTEAVTETTQESSAVN
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatggctgtgaacttcaaagagagaaccgcggatctcctcaagtccgcg
aagttctcggaagagacgcccactaagctgaaaaacttgcgacccttgaaagagttgatt
cgtcaaatggactcctctttactttctgacttggtgcccctgattatggaactgcagaat
gatcattctagtcccgtccgcaagctcctcgccgagttcattggtgaaattggtttgaag
cgctctgaatttcttcctgacatggtacctgtactgataacctttttgaaggatgctgtc
ccagcagttgctcgacaggctattactaccgggactggattatttcggcatacatttgaa
aagattgcaattgagggtttattctcaggtgagttggagaagtctattgaagcatcatgg
gcatggatgctaaagttcaaagatgcggttgtgccaatagcttttcagcctggaagcgat
ggggttagactgctggcagtaagattcatagaagttatggttcttctttatactccagat
cctaatgggtcttcacaacctccccttcatcttggttatgatggtaaattggacacagta
gggtttgacatatcatggctgcgtggtggtcatcccctgcttaacgttggtcagttagca
gtagaagcaagtcagagtctgggattattacttgatcagcttcgcttcccttccttaaag
tcactcagcaattcgatcatcattgtgcttatcaatagtctttcagcaattgcaaagaaa
agacctgcatattatgggcatatattgcctgtattactgagtttggacccatcaaattct
gttgtcaaaggtgtgcctgtagctggtgcaaatcatgctctaaagaatgccctcatgtcc
tgtttggaatgcagtcatcctggtgtggcaccgtggcgggaccgcttgcttgatgcctta
gactcaatgaatgctggacagaaagaggcttctgaaacttctgctcaaatctctagtgaa
ccacactctatgaaggaagagaagctagtaattcaatcttctgaggctgcacaaatttac
caagtgaggaaaaggagtctcactccagaggcgaaagatttggttgaagaagatgatcta
tcatcatcatctggaaaacgagtaaaagtagaacttgttgaggattccactaaagaattg
cttcacagttgttccatttcagctcgagagggtgttccctcatctgggacgccagtttct
acaagagatattgatagtgggccagtacagcaacttgttgccatgtttggtgcattggtt
gctcaaggtgacagagcagctacctctttagagattcttatatccagcatctcctctgac
ttattagcagaagtggtaatggctaacatgcggtttcttccaccaacttgtcctcaatcc
gaggaagaggcgcttggtggagctggtagtgtgactccagagccatcattgttatcagat
attttatcattattgaacccgcaactagcagcatctcgtgacacactacaagatggaagg
gaagaacaacacatggaaactgttactgttgcaacagagatccctgcgtgtagtgcttca
ctggctcttcaaggaatggaacagggtgagtcagatatggcctctgaaacaaatgaggtg
ttgaccacaaacagtgaagtaccaggtcttgaccccaaagcttgcaatatggaaatccaa
gacacagtaccgggtcttgaccccaaagcttgcaatatggaaatccaagacacagtggaa
gtttcttattcttccactgtcgacacacagggaactaatcaagaccaagctacaagtgca
ggggactatgtgtctgaagcaagtagccaaaaactggctggttcagagtcaaattcttct
ataacatcttgccaagtcttgcttccaaagatggtagcaccagttgtctatataactgag
gaagaaaaggataatcttcagaaattggcatttgtgcgtgttgttgaggcatacaagcaa
atagctttttcaggagggtcacacatccgcttctccttgcttgcttatttgggggctgag
tacccattggagttggattcatgggggcttttacaaaagcatatattggctgattatcta
aatcatgagggacacgagttgacattacgtgtcctctacaggttatatagagatattgag
caggaccaggatttcttctcttctacaactgctacttcaatttatgaatcatttcttttg
gctgttgctgaaacactacgagactcttttccggcttctgacaaatctcttagtaggtta
cttggggaggtgccctacctaacaaagacagtgtttaagttgttagagtgcttgtgctct
cctggaattgataaaaaaagtggcaaggaatcactgagtggtgaccgtgttactcaaggc
cttagtgctgtgtggaatctaattttgctgcggcctcccattcgagatgagtgcctgaag
attgcgttgcagagtactatacatctctgggaagaagtgaggatgaaggcgattcgtttg
gtagcaaacaagttatatcccatgctttgcatttctcaaaaaattggagattttgccagc
gaaatgctgttttcagttgtaaataattctcatgtttccgaaagcaccagtgctgaagaa
tcaagtaatccaggccaaaaggatcatgacatggaaagacatgttagtggaggcttgtca
acaactagtggcccaagcaaggagcctgtctctgatacttctaaccagttggcttcagct
cgaagcatttcttcctctggagctgctgaggcgcaaaggtgcatgtctctatattttgct
ctttgcactaagaaacactctctcctacggcagatttttgtaatctacaaagacctacca
aaaaccgcaaaacaggcagttcatcgtcatattccaatcttagttcgaactataggctct
tcatctgaattgctggcaattatttcagattctccagatggaagtgaaagtcttttaatg
caggttttgcatactttaacagaaggggcagttcctccaccagagttggtacttactgtt
agaaaattgtatgaatctaagcttaaggatgtagagattctcattcctatattagcttct
ctttcaaaagatgaggtcttgccaatatttccacaacttgttaatcttccatcagataaa
ttccaagctgcagttgctaaattacttcagggtttgcctcatgctagcccttccctgacg
ccagctgaattgctaattgctattcatgggatagatcctgagagagatgggataccttta
aaaaaggtcatggatgcttgctctgcttgttttgagcaacggcaggtgtttactcagcaa
gtttttgctaaggccttgaaccaattagttgaacaaattcctctccctttactatttatg
cgaacagtcatacaggcaattggtgtttttccggctctggtagactttataatggagatc
ctctcacgacttgtaagcaagcagatatggaagtacccaaaattgtgggtgggattcttg
aagtgcactcttcagactaaacctcaatcttttagtgtgttgctccagttaccggctgtg
cagcttgaaaatgcactcaacaaaaatcctgctttgaggtctcccttggttgcatatgca
aatcagccaaaccttcggtcatctcttcctaggtcaacattgatggtcttagggcttgct
caagaaccacaaagtcagccacaatctcaaatgcaaactgctgatcctgcaaactctacg
gaggcagttacagagacaacccaagagtcatctgctgtcaactaa
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