Aristolochia californica: 137936085
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Entry
137936085 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137936085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137936085
03012 Translation factors [BR:
acak03012
]
137936085
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137936085
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137936085
Translation factors [BR:
acak03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137936085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
137936085
NCBI-ProteinID:
XP_068636725
LinkDB
All DBs
Position
Unknown
AA seq
1200 aa
AA seq
DB search
MPYSAFLRSSFQYGHRLTMSQRTFALPTSLCVTPRKSRFFTCPFPFMSLRSHAMGYAFVC
VPQRRSVIASSAAGGMTTRSLDFDWRENRGLVFNPRNDSFQLFQQPSKSYGRYAYDDYSE
ESDREIESSAKGASTLDNIDEWKWKLSMFARNKEEQEITTTEKKDRRDFEQLATLASRMG
LYSRQYEKVVVISKVPLPNYRSDLDTKRPQREVTIPLGLHRRVDTLLREHLSRKGNDRGR
FGDSAFSRSSSDESIGMDDGLSEQQGPLHAASVLMENVLRQRSLRLRNQQQAWKESPEGH
NMQEFRRSLPAYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIDAARGASCS
IICTQPRRISAMSVSERVAAERGEKLGGSVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLV
DRNLNGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLMLMSATLNAELFSSYFGGA
PKIHIPGFTYPVQTHFLENVLEMSGYRLTPENQIDDYGADKMWKMQKQTLRKRKSQIASV
VEDALEAADFKEYSMRTRQSLSCWNPDSIGFNLIENVLCHICRKGRPGAVLVFMTGWDDI
NSMKEQLQAHSLLGDPTRVLLLACHGSMASSEQKLIFEKPEEGVRKIVLATNMAETSITI
NDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVH
DSFADYQLPELLRTPLQSLCLQIKTLKLGSVSEFLSKALQSPELLSVQNAVEYLKIIGAF
DEEENLTILGRHLSMLPVEPKLGKMLIYGAIFRCLDPILTVVAGLSVRDPFLMPFDRKDL
AETAKAQFSARDFSDHLALIRAYEGWKHAERAQNGHEYAWRNFLSVQTLKAIDSLRKQFF
SLLKDTSLTDEHSGTCNMWSHDEDLVRAVICSGLYPGISSVVNKEKSIKLKTMEDGQVLL
HSNSVNAREAKIPYPWLVFNEKVKVNAVFLRDSTAVSDSMLLLFGGNISSRGFDGCLKML
GGYLEFFMKSDLAETYLTLKQELDELIQTKLLNPKADIYVHEQLLSAIRMLVSEDPREGR
FVFGRQEVKPMMKAAPFSAVGKGAGGSNSKNQLQTLLARAGHEAPTYRTKELKNSTFRAC
VEFNGMQFVGQPCASKKLAEKEAAAEAIEWLIGGAVPVHKDVNHMSMLLKKSKKQPRRRS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgccgtattccgccttcttgcggagctcttttcaatacggccatcggcttaccatgtct
cagaggacctttgctcttcccacgtcgctctgcgtaactcctcggaagtccagatttttc
acttgtccattcccatttatgagtttgagaagtcacgccatgggctatgcattcgtctgt
gttccgcagagacgctctgttatcgcgtcatctgcggcaggcggcatgacaactcgctct
cttgatttcgattggagggagaacaggggtttggtgttcaatcccagaaatgactcgttt
cagctttttcagcagccgagtaaaagttacgggagatacgcgtacgatgactactccgag
gagtctgatcgcgaaatcgagtcgtcggctaagggtgcttcaacacttgacaacatagat
gagtggaagtggaaattaagcatgtttgctcgcaacaaggaggagcaagagataactaca
actgagaaaaaggacaggcgtgattttgagcaacttgctactttggcttctcgaatgggt
ttatatagccgacaatatgaaaaagttgttgttattagtaaggtcccactgccaaactac
cggtctgatttggatactaaacgtcctcagagagaggttacaatcccattgggtctccac
aggagagtggatactctacttcgggagcatctttctaggaagggtaatgataggggacgt
tttggagactctgctttttcaagatctagcagtgatgaaagtattggtatggatgatgga
ctttctgagcaacagggacctctacatgcagctagtgttcttatggagaatgtcctcaga
caacgaagcttgcggttgcgcaatcagcaacaagcatggaaggaatcgccagaagggcac
aatatgcaagagtttcgaagaagtcttcctgcttataaagaaagggatgcactactaaag
gccatctctgaaaatcaggttgttgttgtctctggagaaactggatgtggtaagacaaca
cagcttccccagtacattttggaatctgagattgatgctgctcgtggagcatcttgtagt
atcatttgtactcagcctagaagaatatcagctatgtctgtttcggagcgagttgctgct
gagagaggggagaagttgggaggatctgttggttataaagttcgtctggaaggcataaaa
ggaagggatactcgtttactgttttgcaccacaggtgttttattaaggagattactggtt
gatagaaatctcaatggtgtaactcatgttattgtggatgagattcatgagcgtgggatg
aatgaagattttttgctcattgtcctaaaggagcttcttccacggcggccagagcttcga
cttatgttaatgagtgcgaccttaaatgctgaacttttttcatcgtattttggtggagct
ccaaaaattcatattcctggtttcacatacccagtgcagactcattttctggaaaatgtt
ctggaaatgtctggttaccgattgacacctgagaatcaaattgacgattatggagcagac
aaaatgtggaaaatgcagaaacaaactctgaggaaaaggaaaagtcaaattgcttcagtt
gttgaggatgcattagaagctgctgattttaaggaatatagcatgaggacccgtcaatcc
ttgtcctgctggaatccagattctattggtttcaaccttatagagaatgtcttgtgccat
atatgtaggaagggaaggcctggagccgttctggtatttatgactggttgggatgacata
aattctatgaaagaacagcttcaagcccattcgttactgggagatcctacaagagttttg
cttcttgcatgtcatggttcaatggccagctctgagcagaaattaatttttgaaaagccc
gaagagggagtgcggaaaatagttcttgctactaacatggctgagacaagtatcaccatt
aacgatgtggttttcgttgttgactgtgggaaggcgaaagaaacatcatatgatgcatta
aataatactccatgtctccttccttcctggatctcgaaggctgcagctcgccaaagaaga
ggaagagctggccgggttcagccaggcgagtgttaccatctctaccccagatgtgtacat
gattcttttgctgattatcaattaccagagctgttgaggacgcctctgcaatctctgtgc
ttgcaaataaagactcttaagcttggaagcgtctctgagttcttatccaaggccttacaa
tcgccagagctattatcggttcaaaatgctgtagaatacttaaagatcattggggctttt
gatgaagaggaaaatttgacaattttaggacgacacctgtcaatgcttccagtggaacct
aaattgggaaaaatgcttatatatggagccatattccgctgcctggatcctatcttaaca
gttgttgctggtttaagtgtcagagatccatttctgatgccgtttgacagaaaggatctt
gcagaaaccgctaaagcacagttctctgcccgggatttcagcgatcatctggcactcatt
cgagcttatgagggttggaaacatgcagaaagggcacagaatggacatgaatatgcttgg
aggaattttctttcagtgcagactctaaaggctattgattcccttcggaagcaatttttt
tctctgctcaaggacaccagcctgactgatgagcattctggcacatgcaacatgtggagc
catgatgaagatcttgttcgggctgtcatatgttctggcctttatcctggaatttcctct
gttgtgaataaggagaaatcaataaaattgaagactatggaggatggtcaggtcttgctt
cactctaactcggtgaatgctcgggaagcaaaaattccatatccatggcttgtgttcaat
gagaaggtgaaagtaaatgcggtattccttcgagattcaacagcagtgtctgattcaatg
ttactactatttggaggaaatatttcctctagaggcttcgatggatgcttgaaaatgtta
ggtggttacttggagttctttatgaagtctgacttagcagaaacttacctgactctgaag
caagagcttgatgagctaattcaaacaaaactcctgaatccaaaagcagacatttatgtc
catgaacaactcctctcagctatacggatgctggtttctgaggacccacgtgaaggtcgc
tttgtctttggtcgtcaggaagtaaaacccatgatgaaggctgcacccttttcagcagtt
gggaaaggtgcaggtggaagtaactcgaagaaccagcttcaaacattgttagcccgagct
ggtcatgaggctccaacttataggactaaggaattgaagaacagtacgttcagagcatgt
gttgagttcaatggaatgcaatttgttggacagccctgcgccagcaaaaagctagcagaa
aaagaagcggctgctgaggcaatagagtggttgataggcggtgctgtacccgtccacaaa
gatgttaatcacatgtctatgctgcttaaaaagagcaaaaagcagccccgtcgacggtca
tga
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