Aristolochia californica: 137936688
Help
Entry
137936688 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137936688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137936688
03041 Spliceosome [BR:
acak03041
]
137936688
03009 Ribosome biogenesis [BR:
acak03009
]
137936688
03016 Transfer RNA biogenesis [BR:
acak03016
]
137936688
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137936688
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137936688
Spliceosome [BR:
acak03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137936688
Complex C
U4/U6.U5 tri-SnRNP related factors
137936688
Ribosome biogenesis [BR:
acak03009
]
Eukaryotic type
Pre-60S particles
Helicases
137936688
Transfer RNA biogenesis [BR:
acak03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137936688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137936688
NCBI-ProteinID:
XP_068637616
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MGESPTQGKRKSPEPADVLQQPSEGSQIPPEPAAKRRSLSRTCVHEVAVPVGYTSSIDET
LHGTLSNPVYNGNMAKTYPFNLDPFQQVSVACLERKESVLVSAHTSAGKTAVAEYAIAMA
FRDKQRVIYTSPLKALSNQKYRELSKEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICN
LHKQPCHVVYTDFRPTPLLHYVFPIGGSGLYLVVDENEQFREDKFMELQDNFTKQKKIID
GNKSGGPKASGRIAKGGTASGGSDIYKIVKMCMEKMFQPVIIFSFSRRECEQHAISMSKL
DFNTKEEKDVVKEVFENAILCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKETVEL
LFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGK
DERGICIIMVDEKLEMTTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKN
SFHQFQHEKALPDIGEKVSKLEKEAAMLDASGEAELAEYHKLRLNIAELEKRVMAEITRP
ERVLYFLLPGRLVKVRDGGTDYGWGVVVNVVKKPAAPLGALPSSLTSLRSSGAYMVDILL
QCSPGLSENVGQPKPCPPRTGEMGEMHVVLVQLSLICAISSIRISIPSDLRPVEARQGVL
LAIQELGTRFPKGLPKLDPVKDMGIQEPEFVDLVNQIDELEQKLHVHPLHKSYQDEQQIK
CFQRKAEVNHEIQQLRSKMRDSQLQKFRDELKNRARVLKRLGHIDSDGVVQLKGRAACLI
DTGDELLVTELMFNGTFNDLDHHQVAALASCFIPGDKSNEQIQLRKELAKPLQQLQETAR
KIAEIQRECKLEINVEEYVESTVRPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRLARR
LDEFLNQLRGAAKAVGEVDLEKKFGAGSESLRRGIIFANSLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtcaccaactcagggcaagagaaaatcacctgaacctgccgatgtcttgcaa
caaccttctgaaggatctcaaatacctcctgagccagcagctaaacgccgtagtctgtct
cgtacatgtgtccatgaggttgcagttcctgttgggtacacttcctccattgatgagact
ctacatggaacactttcaaatcctgtttacaatggtaacatggcgaaaacctaccctttt
aaccttgacccgtttcagcaagtatcagttgcttgtcttgagcggaaggagtcagttttg
gtatctgctcacacttcagctggcaaaacagccgttgcagagtatgctattgcaatggca
ttcagggataagcaaagagttatctacacttcccctttaaaggcattgagcaatcagaaa
tatagagagctgagtaaagagttttcagacgtaggcctcatgactggggatgtcactctt
tcccccaatgccagttgtttggtcatgactacagaaattcttagaggaatgctttataga
ggttctgaggtcctgaaggaggttgcgtgggttatctttgatgaaatccattatatgaag
gatcgagaacgtggtgtagtttgggaagaaagtattatatttttgcctcctgccattaaa
atggtatttctctctgcaactatgtcaaatgcaaccgagtttgctgaatggatatgcaac
ttgcacaaacaaccgtgtcatgttgtatacaccgattttagacccactcctctcttgcat
tatgtgtttcctattggaggttctgggttgtatcttgttgtggatgagaacgaacagttt
agagaggacaaatttatggagttgcaggataattttacaaagcaaaaaaagatcattgat
ggcaacaaaagtggaggtcctaaagctagtgggaggattgctaagggtgggactgcttca
ggaggatctgatatatataagattgtcaagatgtgtatggagaaaatgttccagccagtt
attattttcagctttagtagaagagagtgcgaacagcatgctatttccatgtcgaaactt
gacttcaatacaaaagaggagaaggatgttgtaaaagaggtctttgagaatgcaatactt
tgtctgaatgaagaagatagaagtttacctgctattgaattgatgttgccacttcttcag
cgtggtattgccgtgcatcattcgggccttctcccaataattaaggaaacagttgaactt
ttattccaagaaggtcttgtaaaagccctctttgctacagaaacatttgccatgggttta
aatatgcctgctaaaacagtagtgttcacatcagtcaaaaagtgggacggtgatagtcat
cgttacattggatctggtgaatacatccagatgagtggccgagcagggcgtcgtggcaaa
gacgaacgtggcatttgcataattatggttgatgagaagttggagatgactactttgaag
gacatggtcttgggtaagcctgctcctttagtcagcaccttcagactaagctattattca
attttgaatctaatgagccgggctgagggccaatttactgctgagcatgttatcaagaat
tcattccatcagtttcagcatgaaaaggcattacctgatattggagaaaaggtttctaag
cttgaaaaagaggctgctatgctggacgcatcaggagaggctgaacttgctgaataccat
aagttgaggcttaatatagcagaacttgaaaagagggtgatggccgaaatcactagacca
gagagagttttgtattttcttcttcctggtaggctggttaaagtacgggatggtggtact
gattatggttggggggtggtggtcaatgtggtaaaaaaacctgctgctcctttaggtgct
ctgccatcttccctgacctctttgcgtagcagtggagcttatatggtggatatattgctt
cagtgctctcctggtctaagtgagaacgttggccaaccgaagccatgcccacctcgtacc
ggggaaatgggtgaaatgcatgtggttcttgtacagttgtctctaatttgtgctatcagc
agtatcagaatatctattccttccgatcttcggccagtggaagcaaggcaaggtgtactc
ctggctattcaggaactaggaacacgttttcccaagggccttccaaaactggatcctgta
aaggatatgggcatccaggaaccagagtttgttgatttggttaaccagattgatgaacta
gagcagaaactacatgttcatccactccataagtcctaccaagatgagcagcagataaag
tgtttccaaagaaaggcagaggtgaatcacgagattcaacagcttaggtcaaagatgcgg
gattctcagcttcaaaaattccgtgatgaactgaaaaatcgtgcccgagttttgaaaagg
cttggccatattgattctgatggtgtagttcaactgaagggaagagctgcatgcttgata
gatacaggagatgaactgttggtgactgaattgatgtttaatggtactttcaatgatctt
gatcaccaccaagttgccgcacttgctagctgcttcattccaggagataaatcaaatgag
cagatacaattgagaaaggagctagccaagcctctgcaacagctgcaagaaacggccaga
aaaattgctgagatacaacgggagtgcaagttggagataaatgtcgaagagtatgtggaa
tcaacagttagaccatacctgatggatgtcatctattgttggtcaaagggggcaactttt
gcggaagttattcaaatgacagacatttttgaagggagcataatacgtcttgcgaggagg
ttagatgagtttttgaaccagttgcgtggagctgctaaggctgttggggaagtagatttg
gagaaaaagttcggtgcaggtagtgagagcctccgtcgaggaataatatttgccaattca
ttgtatttgtaa
DBGET
integrated database retrieval system
