Aristolochia californica: 137936980
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Entry
137936980 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137936980
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137936980
mRNA degradation factors
3'-5' decay
Ski complex
137936980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137936980
NCBI-ProteinID:
XP_068638074
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MDRVVAANELAFRIGFSGYSGHLRLEPQPAVECTNPLDSIPDLVLPPAFEPETPETVKRR
LEDEYLVPQLDKDEFSAEKSGRQWDFDWFDMAKVHLEPSVPRCVVVPSWELPFRRRDTEN
VPGKWIPSSVQVEVTKLMEGAQDSGPLPRMPGPAKDFVRGSINNRPFRPGGLDGTQSSER
ALPAGVQNGDWVREVLSGGPAQAIPPSLKQGLDFGALKVYPSEWKCVEEKSLPSNSSKED
QSSLSLQFDDLFKKAWEEGAVEEPDNNIDSSETESTIVEGEIEREDHETNIFPDADSSLL
FETLLDGPGDSTLKIEETTDSGGQKTKEAWALTVGSEGIADKFYELVPDMALEFPFELDN
FQKEAIYYLEQGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDF
CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERG
VVWEEVIIMLPRHVNVVLLSATVPNTMEFADWIGRTKQKKIRVTGTTERPVPLEHCLFYS
GEMYKVCESETFLPQRLRGAKEAFKKKNSNTVGGFSGSAISNTAAQARQREIHNRGKVQK
HTGSQGAGYSSSAGGAHQNNWGLRRSEASLWLLLINKLLKKSLLPVVIFSFSKNRCDKSA
DNLPGTDLTTSSEKSEIRLFCDKAFSRLKGSDRNLPQVIRVQSLLRRGVAVHHAGLLPLV
KEVVEMLFCRGLIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLAGEYTQMAGR
AGRRGLDKIGTVLVMCRDEIPEESDLKRVMVGNLTKLESQFRLTYTMILHLLRVEELKVE
DMLKRSFAEFHAQKKLPEKQQLLMLKLAQPTKTIECIKGEPAIEEYYEMAMEAEKHINYI
SEKVMQSNTAQHFLTPGRLVIVKSRMLEDHLLGVVLKTPSANNKQYIVLLLKPDAPPPMA
NSSGAFGKPNEKEGSDFPQGYFIAPKGKRGQDEEYFSSVSSRKGSGAINIKLPYSGNAAG
VSYEVVGIENKEFLSICNDKIKIDQVRLLEEPSNATYSKTVQLMLDLKPKGEKYPPALDP
KTDLKLKDMDLVQMYHTWNSLLQRMSQNKCHGCIKLQEHMMLVKERNRHKEEVNALKFQM
SDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQMEDL
EPAEAVAIMSALVFQQRNTSEPSLTDKLAHAKQRLCETATRLAKLQAHFNVAVNPDDYVQ
DNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAASIMGNSAL
HKKMEAASNAIKRDIVFAASLYVTGV
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgtcgtcgcagcaaatgaattggctttccggatcggtttttccggttacagc
ggccatctcaggctcgagccgcaaccggccgtcgaatgcaccaatcctctcgattcgatt
cccgatttagtccttccacccgcgtttgagccagagacacctgaaacagtgaagaggcgt
ttggaagatgaataccttgtgccacagttggacaaggatgagttctccgccgagaagtct
ggtcggcagtgggattttgattggttcgacatggcgaaagtacatttggaaccgtcagtg
ccacgatgtgttgttgttccgtcatgggaattgccatttaggcgtagggacacggaaaac
gttccaggaaaatggattcctagttcagtccaggtagaggtgacaaagctgatggaagga
gcgcaagactcggggcctttgcctcgcatgcctgggccagccaaggattttgtaaggggc
agcattaataaccgaccctttcgtccaggaggtctcgatggtactcagtcttcagaaagg
gctctccctgcgggtgtccagaacggagattgggttcgtgaagtgctcagtggtggtcct
gcccaggccattcctccaagtttaaagcagggattagactttggtgctctgaaagtgtat
ccaagtgaatggaaatgtgttgaggaaaagagtttgccttcaaattcctcgaaggaagat
cagagtagcttatctctgcaattcgatgatttattcaagaaagcttgggaagaaggggcc
gttgaagaacctgataacaatattgattcatcagaaaccgaatccacaatagtggaagga
gaaattgaaagagaagatcatgaaaccaatatatttcctgatgctgattcctctctgtta
tttgagacactgttggatggaccaggggattctacattgaagatagaggaaacgacagac
agtggaggacaaaaaactaaagaggcatgggcattaactgtagggagtgaagggattgcg
gataaattttatgagcttgttcctgacatggctcttgaatttccttttgaactggataat
ttccagaaggaggctatttattaccttgaacaaggtgagtctgtctttgtggctgctcat
acgtcagcaggaaagactgttgttgctgaatatgcatttgcattagcaacaaagcattgc
actcgtgcagtatatactgctcctattaaaacaatcagtaatcagaaatatagggatttc
tgtggaaagtttgatgtgggtcttctcactggggatgttagcttgaggcccgaggcttcc
tgcctcatcatgaccactgaaatattgaggtcaatgctctatcgaggtgctgatattatt
cgcgacattgagtgggtcatatttgatgaagtacattatgtcaatgatgttgaaagggga
gttgtttgggaggaagtgattatcatgcttcctaggcatgttaatgttgtccttctttca
gcaacagtaccaaacacaatggaatttgctgattggattgggaggacgaagcaaaagaaa
atacgagtgactgggaccacagaaagacctgttcctctggagcattgcctcttctattca
ggagaaatgtataaagtatgtgaaagcgaaacctttttgcctcagagactacgtggtgct
aaagaagcattcaagaaaaagaattcaaatactgttgggggattttcaggttctgcaata
tccaacactgcagcccaagctcgccaacgtgaaattcacaatcgtggcaaagtgcagaag
cacactggttctcaaggtgcaggatattcttcatcagctggtggggctcatcagaacaat
tggggtttgaggagatcagaggcttctctatggctgttgcttatcaataagctattaaag
aagtctcttttacctgtggtcattttctctttttctaagaaccgctgtgataaatcagcc
gataatctgcctgggactgatcttactaccagctctgagaaaagtgaaattcgtcttttc
tgtgacaaggcattttcacgcttgaagggttctgatagaaatcttccacaggtgatcaga
gtccaaagcctgctacgcagaggggttgctgtgcaccatgctggacttctgccacttgtt
aaagaagtggttgagatgctcttttgtcgtggactgataaaggtgttattctcaacagag
acatttgctatgggagttaatgcccctgctagaactgtagtctttgacactttgaggaag
tttgatggcaaggaattcaggcagttacttgctggagagtacactcagatggcgggtcgc
gctggcaggaggggtttggataagattggcacagttcttgtaatgtgtcgtgatgagatc
cctgaggaaagtgatctgaaacgtgtgatggttggaaatctaacaaaacttgaatcacaa
tttcggcttacctacactatgatcctacacttgcttcgtgtagaagaattaaaggtagag
gacatgttaaagagaagttttgctgaatttcatgcacagaaaaaactcccagaaaaacag
caacttcttatgttaaagcttgctcaacctaccaaaactatagaatgtatcaaaggtgaa
cctgctatagaggaatattacgagatggccatggaggccgagaagcatataaactatata
tcagaaaaagtcatgcagtccaatacagctcagcattttttgacacctggcagattggta
atcgtcaaatcaagaatgttggaagatcatttgctaggagtcgtcctgaaaacaccttct
gcaaacaataaacaatatattgttctcttactgaagcctgatgcaccacctcccatggca
aattcctcaggtgcctttggcaaaccaaatgagaaagaaggtagtgattttccccaaggt
tattttattgcccctaaagggaagagaggtcaggatgaagagtacttctcatctgttagt
tctcgcaagggatctggggccatcaatataaaattgccatacagtgggaatgctgcggga
gtcagttatgaggtagtaggaatagaaaataaagagttcctaagtatttgcaacgacaag
ataaaaattgatcaagttcggcttcttgaggaacccagtaatgctacatactccaaaacc
gtgcagctgatgctagatctgaaacctaaaggagaaaaatatcctcctgctctagatcca
aaaacagatctcaaactgaaagacatggacctagtacagatgtaccatacatggaacagt
cttttacagaggatgtctcagaacaagtgccatgggtgcataaaattgcaggagcacatg
atgttggttaaagaaagaaacaggcacaaagaggaagttaatgctctaaagtttcaaatg
tcagatgaagcacttcagcagatgccagattttcagggccgtatcgatgtcttgaaggaa
attggctgtattgatgctgatcttgttgttcaaatcaagggcagggtagcatgtgaaatg
aattccggggaggagttgatatgcacagaatgcttgtttgagaaccaaatggaggatttg
gaaccagctgaggctgtagctattatgtctgcccttgtatttcagcagaggaatacatct
gaaccatctctgactgacaagctggctcatgcaaaacagaggttgtgtgaaactgcaacg
agacttgcaaaactgcaggctcacttcaatgtagctgtaaatcctgacgactatgtgcaa
gacaatctcaagtttgggctcgttgaagtggtttatgaatgggcaaagggaacacctttt
gctgatatatgcgagctcactgatgtacccgaagggcttattgtgaggaccattgttcga
ctggatgaaacttgccgcgaattcaagaacgcggcatccataatgggtaactctgccctc
cataagaaaatggaggcagcttcaaatgctataaaacgtgacattgttttcgcagccagt
ttgtatgttactggtgtataa
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