Aristolochia californica: 137938616
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Entry
137938616 CDS
T10486
Name
(GenBank) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acak Aristolochia californica
Pathway
acak03020
RNA polymerase
acak03420
Nucleotide excision repair
Brite
Enzymes [BR:
acak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
137938616
Transcription machinery [BR:
acak03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
137938616
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
137938616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137938616
NCBI-ProteinID:
XP_068639682
LinkDB
All DBs
Position
Unknown
AA seq
1823 aa
AA seq
DB search
MDMRFPYSPAEVAKVKMVQFGILGPDEIRQMSVVQIEHSETMERGKPKPGGLSDLRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSILRCVCFNCSRILGREDNHK
FKQALKVRNPKHRLKRVLDACKNKLKCGDELNVSVQESDEPMKNQGGCGAQQPKFTIEGM
KIIAEYKQKKKSDDQEQLPEPVERKQMLSAERVLGILKRISDEDCILLGLNPKYGRPDWM
ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ
LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT
PDPTINIDELGVPWSIALNLTYPETVTPYNIDRLKELVEYGPHPPPGKTGARYIIREDGQ
RLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN
LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC
RKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRT
SAWHSESETGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL
GHTQWLVNYWLLQNAFSIGIGDTIADSNTMEKINETIQRAKNEVKELIKAAQEKQLEAEP
GRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG
QQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID
TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSL
KMKKSEFEKVFRYEFDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEGDRYQLGTE
ITTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGEDP
MSIEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFEWVIGEVESRFLQSLVAPGEMIG
CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVN
KTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEK
ISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEA
PKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKINKFEDNDGFKPEMEW
MLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN
YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAALYAEVDYLRGV
TENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGTTPSRSPITGTPYTEA
GMMTPFLMSPNVRASPMTDAQFSPYIGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY
SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPVYSPTSPVYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPSLAYSPSSPRLTPSSPY
SQSSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPYNSGTAPDYSPSSPQYSPSAGYSPTAP
GYSPSSTSQYTPQFSNKDEDSTR
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcggtttccatactccccggcggaagtggccaaggtgaaaatggttcagttc
ggcatcctcggccccgatgaaatcaggcaaatgtcggtggtgcagatcgagcatagtgag
accatggaaagaggtaagcctaaaccagggggtctcagtgacctaaggcttggtacgatc
gaccgaaagttgaagtgcgagacctgcacagcgaatatggcagagtgtcctggacacttc
gggcacctagagcttgcgaagcctatgtttcacataggtttcatgaagactgtgctgtca
attcttcgatgcgtctgcttcaattgctctagaattctcgggcgtgaggataaccacaag
ttcaagcaagctctaaaagttaggaacccaaaacatcggctgaaaagggttctggatgcc
tgtaaaaataagctaaaatgtggagatgagctcaatgtctcagttcaagagtcagatgag
ccaatgaagaaccaaggtggttgtggggcccaacaaccaaaatttactattgaaggtatg
aagataattgcagaatacaagcaaaaaaagaagagtgatgaccaagaacagcttcctgaa
cctgttgaaaggaaacaaatgctttctgcggaaagggtacttggtattctaaagcggatt
agtgatgaggactgtatccttttgggattgaatccaaaatatggacgcccagactggatg
atattacaagttttgccaattcctcctccacctgtgagaccttctgtgatgatggataca
tcttcacgaagtgaggatgatttgactcatcaactggctatgatcattagacacaatgag
aaccttagaaggcaggagaggaatggggctcctgctcacattatctcagagtttgctcag
ttgctgcaatttcacattgccacatattttgacaatgagctgcctggtcagccaagggca
actcagcggtcaggacgacctatcaaatctatatgcagtaggcttaaggcaaaagaaggt
cggatcaggggtaatttaatgggtaagcgtgtggatttttcagcacgaacagtcatcaca
ccagatccaaccattaacattgatgaattgggggttccgtggagcattgctctaaatttg
acataccctgaaactgtgacaccatataacattgataggttgaaggagcttgtggaatat
ggccctcatccacctcctggcaaaactggtgcaaggtacattataagagaagatgggcag
aggctggatcttagatacttgaagaaaagtagtgatcaccatctggagcttggatacaag
gtggagaggcatttgatagatggagactttgttctgttcaaccgacagcctagtcttcat
aaaatgtctatcatgggacaccgcatcaagattatgccgtactcaacatttcggttgaat
ttgtctgtgacttctccatacaatgctgactttgatggtgatgaaatgaacatgcatgtg
cctcagtcttttgagacgagagcagaagttttggaactgatgatggtacctaaatgcatc
gtctcgccccagtcaaaccgtcctgttatgggtattgttcaagacacactcttggggtgt
cgtaagatcactaaaagagataccttcatagagaaggatgttttcatgaacatcttaatg
tggtgggaagattttgatgggaaagtacctgctccagcaattctgaagcctcgacctctt
tggactggaaagcaagtttttaatcttataattccaaagcagataaatctccttagaacg
tcagcatggcactccgagtccgagacagggtttataacaccgggagatactcaagttcgg
atagagaaaggagagcttctttcaggcactctgtgcaaaaagaccctagggacatcaact
ggcagtctcattcatgttatatgggaagaggtgggccctgatgcggctcggaagtttttg
gggcacacacagtggcttgttaactactggcttctacaaaatgctttcagtattggtatt
ggggatactattgccgattcaaacaccatggaaaagataaatgagacaattcagagagca
aagaatgaggtgaaagagctaattaaggctgcacaagaaaagcagttggaggcagaacct
gggcggactatgatggaatcatttgaaaatagagtgaatcaggtgttgaataaggctcgt
gatgatgctggtagtagtgcacagaagagcttgtccgagagtaacaatcttaaggcaatg
gttactgctggctcaaaaggaagttttatcaacatctcacagatgactgcttgtgtggga
caacaaaatgttgaaggaaaacgtattccttatgggttcaatgatcggactttacctcat
ttcacaaaagatgattatgggcctgaaagtcgtggttttgtagaaaactcgtatcttcgt
ggacttacacctcaggaatttttcttccatgctatgggtggtagggaaggtcttatagat
acggctgtgaaaacctctgaaactggctatattcaaagaagacttgtgaaggctatggaa
gacattatggtcaaatatgatggtactgtcaggaactcgttgggtgatgtaattcaattt
ctttatggagaagacggaatggatgctgtttggattgaaacacagaagttggattccttg
aagatgaagaagtcagagttcgaaaaagttttcaggtatgagtttgatgacgataattgg
aatccgagctacatgttacctgagcatgttgaggatttgaagaccatcagagagttccgt
aatgtgtttgatgctgaagttcaaaaactggaaggagatcgataccagctagggactgaa
ataaccacaacaggtgataactcgtggcccatgcctgtgaatctcaagagactgatctgg
aatgcacagaagacgtttaaggttgacttgagaagaccatccgatatgcatcctatggag
attgttgaagcagttgataagctccaagaaagattgaaggttgtccctggtgaggatcca
atgagcatagaagctcagaaaaatgctactctcttcttcaacatacttcttaggagcacg
ttggcaagcaaacgcgttttaaaggaatacaggctcactcgggaagcatttgaatgggtg
atcggtgaggttgagtctagatttttgcagtcgcttgttgcccctggtgaaatgatagga
tgtgtggctgctcagtcaattggtgagccagctactcagatgaccctaaacacattccac
tatgctggtgtgagtgccaagaatgttactcttggtgttccacggttgcgggaaattata
aatgttgcaaaaaaaatcaagactccttcactgtctgtgtacttgaagcctgaggttaac
aaaacaaaagagaaggcaaaaaatgtccagtgtgctttggagtacaccacactgcgtagt
gtgacacaagcaacagaagtttggtatgatcctgatcccatgagcacaattattgaggaa
gatgttgattttgttaagtcctactatgaaatgccagatgaagaggttgccccagaaaag
atatctccttggcttctgcgtattgagctgaaccgtgaaatgatggtggataagaaactc
agcatggcagatattgccgagaagattaaccttgagtttgatgacgacttaacatgcata
tttaatgatgataatgcagagaagctcatccttcgtatccgtattatgaatgatgaggcc
cctaaaggagagttggaagatgaatctgctgaagatgatgtcttcctcaagaagatagag
ggtaacatgttaacagagatggctcttcgaggaattcctgacatcaataaggtgttcatc
aagtcaggaaagattaacaaatttgaggataacgatggatttaaacctgagatggagtgg
atgctggatactgaaggtgtcaatctactggcagttatgtgtcatgaagatgttgatgcc
agaagaactaccagcaaccatttgatcgaagtaattgaagtacttggaattgaggcagtt
cggcgttctctgcttgatgagttgcgtgtagtcatatcttttgatgggtcctatgtgaac
tatcgacatttggctattctctgtgacactatgacttataggggacacttaatggccatc
acccgtcatggtattaatcgcaatgatacgggtccaatgatgagatgttcatttgaggaa
actgtagatattcttctcgatgctgcactatatgctgaagtagattatctcaggggtgtt
acagaaaatatcatgcttgggcagcttgctccaatcggcactggggactgtgccttgtat
ttgaacgaccagatgcttcagcaggcaattgagctccagcttcctagttacatggaaggg
ttggatttcggtacgactccatctcgttcacccattacaggcactccatatactgaagct
ggcatgatgacaccttttttgatgagtccaaatgtccgagcttcacctatgacagatgcc
caattttctccttatattggtgggatggcattttctcctacctcttcgccaggttacagt
ccatcatccccaggctacagtccatcatctccagggtatagtcccacatctccaggatat
agtcccacatctcctggttatagtcctacatcacctggttatagtcccacttcccccaca
tacagccccagctctcctggatatagccctactagccctgcttactctcccactagtcca
tcatactcacctacctcaccaagctacagtccaacgtcacctagttacagtccaacttca
cccagttacagtcccacttcaccgagctacagtcctacatctccggtttatagtcccact
tctcctgtgtatagccctacttctcctgcatacagtcctacatcaccatcttacagtccc
acatctccttcatatagccccacttcaccttcctacagtcctacatctccttcatatagt
cctacctctcctgcttacagtcctacctctcctgggtacagtcctacttcccctagctat
agcccaacctctcccagttatagtccaacgtcaccaagctataatcccccttctgcaaaa
tacagcccatcgctagcatactcccctagcagtcccaggttaactccttctagtccatac
agtcagtcatcaccaaattacagccctacctcaccatcatattcaccaacttctccatca
tattctcctcctagtcctacatatagcccgagcagtccgtacaattctggaactgctcca
gattacagcccaagttctcctcaatacagccctagtgctggttactcgcctactgctccg
ggttactctccctcgtcaacaagccaatacacaccacagttcagcaacaaggatgaggat
agcacacggtaa
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integrated database retrieval system
