Aristolochia californica: 137940392
Help
Entry
137940392 CDS
T10486
Name
(GenBank) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137940392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137940392
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137940392
mRNA degradation factors
5'-3' decay
Decapping complex
137940392
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
137940392
NCBI-ProteinID:
XP_068641529
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MASAGNPNQPTPFDVQKFFKPSSPSPNPNNPPTPFPPPSSYSPTSTLYPAPPTGPFSYPA
QTTAFHHYLPYPPQEPLPSTRTVSYPTPPSPGPNNPGARLMALLGNSPSPNVELPSSSMG
SSSEFSVLQSNATILPAVPSAPPVPQPSPARLLSSSKAPKGRNLYGAGKYIKYDIDVRPP
GESQPQLEVTPITKYVSDPALVLGRQIAVNRTYICYGLKLGAIRVLNINTALRALLRGHT
QRVTDMAFFAEEVHLLASASIDGRIFVWKIEEGPDKEDKPQITGNIVIAIQIGGDGESFH
PRICWHSHKQEILVVGIGKRVLRIDMTKVGKGESFSAEEPLKCPTEKLIDGVQFVGKHDG
EVTDLSMCQWMTTRLVSSSMDGTVKIWEDRKSMPLVTLRPHDGQPVNSATFLTCPNRPDH
IVLITAGHLNREVKIWASASEEGWLLHSDAESWQCIQTLELTSSSESRPEEAFVNQVVVL
PHASLILLANAKKNAIYAIHLDYGLYPSATCMDYLSEFTVTMPILSLTGTSDSTPGGDQI
VQVYCVQTQAIQQYALSLSQCMASPLSPSEPEVAADLDNFLDATEMLAEIDQVHEKMKNM
PDPSKPPVSVLSGGLDLASVEVAASGAESKQTPATTVDSVPAGSSSPLPLSPQLSGKLPG
LRAVSNGFDQGLEVGDQSVFDRIVDAVHANMPDIPPLENSQGGEIQVGQNNISVVSALPI
PFKHPTHLITPSEILCMAVSSSEKTEVQDVVVNRDVESVEVEVKVVGEAGTTQHDEFESP
DGKKERAIYTQNQVPLNDTARDCCALPTEILNVEETRHVEHVSATSEAFEPLSNASEEEA
QETANKSAGKVPESNSLSEITQSPLAGKGKKEKSKPTQLLGPPSSIRPSNSTDSFTKPGP
SSNVPTLEGACSQLLTMQETLNQIVVMQKEMQKQMSTVVAAPVTKEGRRVETALGRSMEK
IVKANIDALWARLQEENAKHEKVEREHVQQILSSISNFMNKDLPAILDRLLKKELSAVGP
AVARAINPVLEKAISAAITESFQRGVGDKAVGQLEKSVTSKLEATVARQIQAQFQTSGKQ
ALQDALRSSLESSVIPAFEMSCKAMFEQVDAAFRKGMAEHTTAAHKQFESVHSPLVMTLR
DAISSASSMTQTLTGELADGQRRLLVLSANPEVVNPLVASQGKRPLTALQVDPRLDPTQE
LQRLISERKFGEAFTEALQRSDVSIVSWLCSQVDLQGILTMVPLPLSQGVLLALLQQLSC
DLGNETPRRLEWMRDVALAINPLDPTIALHIRPIFEQVYQILGHHRSLPTITPAEANNIR
LVMHVINSVLMSCKLPDL
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcgggaaaccctaaccagccaacccctttcgacgtgcagaagttcttcaaa
ccttcaagccccagtcccaaccctaacaacccgccaacgcccttccctcccccctcttct
tattctccaacatctacgttgtaccctgcgccaccgaccgggcccttctcctacccggcc
cagactacggctttccaccactatctcccttacccacctcaggaacccctccctagtacg
cgcactgtctcttatcccacgcccccttctccgggccctaataatccaggcgcgaggctc
atggcccttctcggcaactctccctctcccaacgttgaacttccctcctcttcgatgggc
tcatcatccgaattctctgtccttcagagcaacgccacgatcttgccggctgtgccctct
gctccgcctgttccgcagccgtcacctgcgaggttactctcgagtagtaaggcgcccaaa
gggcgaaacttgtatggtgctggcaaatacatcaagtatgatatcgacgtcaggccgcct
ggagaatctcagccgcagctcgaagtgacgccgattaccaaatacgtttcggatccagcc
ttggttttgggccgtcaaattgcagttaataggacatacatttgttatgggttgaagtta
ggggcaattcgggttcttaatatcaacacagcactgcgagctttgctgcgaggtcataca
cagcgagtgaccgacatggctttctttgcagaagaagttcaccttttggctagtgcaagc
atagatgggagaatttttgtatggaagattgaggaagggcctgataaggaagacaaaccg
cagataacaggaaacatagtaattgccattcagatagggggagatggggaatcatttcac
cctcgaatatgttggcattctcacaaacaagaaattttagttgttggaattggaaaacgg
gtgcttaggattgacatgacgaaagttggtaaaggtgaatccttttcggcagaagagccc
ttgaaatgtcccactgagaagctgattgatggggttcagtttgttggtaagcatgatggg
gaagtgactgatttgtcaatgtgtcaatggatgactacccgattggtttcatcatcaatg
gatggcacggttaagatttgggaggataggaaatcaatgccccttgtgacactgaggcca
cacgatggtcaacctgttaattcagcgacattcttaacatgtcccaatcgccctgatcac
attgttctgatcactgcgggtcatctgaatagagaagttaaaatctgggcctctgctagt
gaggaaggctggcttttgcatagtgatgctgaatcgtggcaatgcattcagacattggaa
ttgactagttcttctgaatctcgaccagaggaggcatttgttaatcaagttgtggttttg
cctcatgctagccttattttacttgcaaatgctaaaaaaaatgctatttatgcaattcat
ctggactatggtttatacccctcagctacctgtatggattatttatctgagtttactgtc
acaatgcccattttgagtctcacgggaacaagtgacagcacccctggtggagatcaaata
gtgcaggtttactgtgtccaaacacaggccattcagcaatatgctttgagcttatctcag
tgcatggcatctccactgtctccttcagaacctgaggtggccgctgatctggataatttc
cttgatgcaactgagatgctagctgagatagatcaggttcatgagaaaatgaagaatatg
cctgatccatcaaagcctcctgtatctgtgttatccggtggtctagaccttgccagtgtt
gaagtggctgcttcaggtgcagagtctaagcaaacacctgctactactgttgacagtgtt
cctgctggatcatcatcacctctgccattgagccctcaattgtctggcaagctgccaggg
ctcagggcagtgtcaaatggatttgatcagggccttgaagttggagatcagtcagtattt
gacaggatagtggatgctgttcatgcgaatatgcctgacatccctcctttggagaattca
caaggaggtgaaattcaagtggggcaaaacaatatttctgtggtatcggctcttccaatt
cctttcaaacacccgacccacttgataaccccttcagaaatattatgtatggccgtctct
tcatccgagaagacggaggttcaagatgtggtggtgaacagagatgtggaaagtgttgaa
gtggaagttaaagttgtgggtgaggctggaactactcagcatgacgaatttgaatctcct
gatggaaaaaaagaaagagctatctacactcagaatcaggttcccctcaatgacacagct
agggattgctgtgctttaccaacagaaattttaaatgtggaggaaacccgccatgttgaa
catgttagcgctacttctgaggcttttgaacctctttcaaatgccagtgaagaagaggct
caagaaactgcaaacaaatctgcaggaaaagttcctgaatctaattctttatcagaaatt
acacaatctcctttggctgggaaagggaaaaaggaaaaaagtaaaccaactcaacttttg
ggtccaccatcttccatcaggccttccaactcaacagattcttttactaaaccaggtcct
agctccaatgttccaacattagagggtgcttgctcacagctcttgactatgcaggagaca
ttgaatcagattgtggtaatgcaaaaggaaatgcagaagcagatgagtacggtagtagct
gctcctgttaccaaagaaggtagaagagtggagacagcccttggccgcagcatggagaaa
atagttaaagccaatattgatgctttgtgggctcgccttcaagaggagaatgcaaaacat
gagaaggttgaaagggaacatgttcagcagatactgagttcgatctcaaattttatgaac
aaagacttgcctgcaatactagaccgtctattgaagaaagaactctctgctgtcggaccg
gctgtagctcgtgcgatcaatccagtcctggaaaaagccatttctgctgctattacagag
tcattccagagaggtgttggggacaaagcagttggtcagctggaaaaatcagttacttca
aaacttgaagccacagtagcaaggcaaattcaagcacagtttcaaacctctggcaagcaa
gctcttcaggacgcattgagatcaagcctggaatcatcagtgatacctgcatttgaaatg
tcctgcaaggcaatgtttgagcaagtggatgctgcatttcggaaagggatggctgaacat
accactgcagcacataagcagtttgagtctgttcattctccattagttatgactttaagg
gacgcaattagctctgcttcatcaatgactcaaacattaactggtgaattagccgatggc
caacgcaggcttctagttctttcagcaaatccagaagtcgtgaatcccttggtagcatcg
cagggcaagcgacctttgactgctctccaggttgacccccgactggatccaacacaagag
ctgcagagactgatctcagaacgtaaatttggggaagccttcactgaagctcttcagaga
agtgatgtatcaattgtatcctggttatgttctcaggttgatttgcagggaattttaacc
atggttccgcttccgctgagccaaggagttcttttagctcttctccaacagctatcctgt
gatcttgggaacgaaacacccagaaggctggagtggatgagagatgttgcccttgccata
aatcctctagatcctaccattgctcttcatatacgccccatttttgagcaggtataccag
atcttgggtcaccatcgctcactccccaccattacacctgctgaagcaaataacattcgc
cttgtcatgcatgtcatcaattctgtattgatgagctgtaaattacctgatttgtag
DBGET
integrated database retrieval system
