Aristolochia californica: 137941890
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Entry
137941890 CDS
T10486
Name
(GenBank) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137941890
03015 mRNA surveillance pathway
137941890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137941890
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137941890
mRNA cycle factors
P-body specific factors
137941890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
LTXXQ
Motif
Other DBs
NCBI-GeneID:
137941890
NCBI-ProteinID:
XP_068643602
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MEHQEDECRVVGEHHSKQDDEETVARLEEHKKSIEAKIALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLRQINEEQREGLMEDLRNVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFIPGKSGDDSDVDRSMKAMKKRSTLKFLMELHFVGVIED
ANVFVNIIKDLTSLEHLKDRDTTQMNLSLLSSFARQGRVFLGLSLSEQGIHEEFFNGLNI
TAEQKKSFKKMIQTYYEASADLLQTEHTSLRHMEHENSKVLNAKGELSDENVNAYEKLRK
SFDHLFRGVSSLAEAIDMQPPVMPEDGHTRVATGEDTSFASAGKESSSLEPVWDDEDTRS
FYECLPDLRAFVPAVLLGEVEPKTTDPSTKASEQQPEPITEDQGHVVGQESGETSLDSEA
LDGKGEDKGKDKEDKDKEKIKESDRGKDKDGERKGEVEKEKLKGHEGSNLDGLLQRLPGC
VSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSLM
LLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFTCLKACLDDFTHHN
IDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPE
RSARVCKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWDECEPYILKSFMKVHKGKY
SQVHLIASLTAGLSRYHDDFAVAVVDELLEEIRLGLELNDYGMQQRRIAHMRFLGELYNY
AHIESSVIFETLYVILIFGHDTPEQDVLDQPEDCFRIRMIITLLQTCGHYFDRGSSKRKL
DRFLIYFQRYVLSKGSIPLDIEFDIQDLFADLRPNMNRYSSIEEVSTALVELEEHERNVA
TEKATIEKQTADIESHRPLTQMNPSILASNGPRSVANGVEENGGVHEDIESNSDSDSASI
DVEGTHDDEEELYEDKSDHHDDGCDSEDDEGGGPMGSDEDEDVQVRQKVVQVDPQEEVEF
ERELKALMQESLDSRKLELRGRPTLNMMIPMNVFEGSKDHGRAGEGESGDETLDEEGSGG
QNKVRVKVLVKKGHKQQTKQMFIPGDCTLVQSTKQKEAAELEEKQNIKRLILEYNDREEE
FVGGTGTQPINWMQTGGSRPSGRGAWEGASRPGGMRQRHHSYGLYGRRK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcaggaggatgagtgtcgtgtagttggagagcatcatagcaaacaagatgat
gaggaaactgttgcacgtcttgaggagcacaaaaaatcaattgaggcaaaaattgctcta
cgccaaagtaacttgaatcctgaaaggccagattcagggtttctgaggacactggactcc
agtattaagcgcaatacagctgtcattaaaaaacttaggcagataaatgaagaacagcgc
gaaggactcatggaagatctacggaatgtcaacttaagcaaatttgttagtgaagccgtg
actgctatctgtgatgcaaagcttaggtcatcagacatacaagctgctgttcagatatgc
tctttgcttcatcaaaggtacaaggacttctcacctagtctaattcaggggctgttgaaa
gtgtttatacctgggaagtctggagatgattccgatgtagatcggagcatgaaggcaatg
aaaaagcgcagcactctgaaattcctaatggagctccattttgttggagttatagaggat
gccaatgtttttgtgaacatcataaaggatcttacaagcttagagcatttaaaggacaga
gatacaactcagatgaatttatctctcctttctagttttgctcgccaaggaagagtcttc
ctgggactttctctgtcagaacaaggaattcatgaagagtttttcaatggacttaatatc
acggctgagcagaaaaaaagttttaaaaagatgattcaaacttattatgaagcatctgct
gatctactccaaactgagcatacgtcactacgacatatggaacatgaaaattcaaaggtt
ttgaatgccaaaggggagctcagcgatgaaaatgtgaatgcatatgaaaagctgcggaaa
tcatttgaccacttattccggggtgtctcttctttggctgaagcaattgatatgcagcct
cctgtaatgccagaagacggtcacacaagggttgcaacaggagaagatacctcctttgca
agtgctgggaaagaatcttcctctcttgaacctgtttgggatgatgaagatacgaggtcc
ttctatgaatgcttacctgatctcagggcatttgttccagctgtactattgggtgaagta
gagcccaagaccaccgacccatcaaccaaggcatcggagcagcaacctgaaccaattaca
gaggaccagggtcatgtcgtgggacaagaaagtggagagacctctttagattctgaggca
ctagatggaaaaggtgaggacaaaggcaaggacaaggaggacaaagataaggaaaaaata
aaagaatcggatagagggaaggacaaagatggtgagagaaaaggagaagtggagaaggag
aagttgaaaggtcatgaaggatcaaatttagatggtctgttgcagaggctccctggctgt
gtgagccgtgatcttattgaccaattgactgtggagttttgttacttgaattcaaaatca
aaccggaaaaagcttgtacgggctttgtttaatgttcctaggacttctttggagctcctt
ccatactattctcgtatggtagcaacattgtcaacgtgcatgaaagatgtctctttgatg
cttttgcaaatgttggaggaggagttcaactttttgataaataaaaaggaccaaatgaac
attgagacgaagataaggaacataaggttcataggagagctttgcaaatttaaaattgct
cctgctggacttgtctttacttgtttgaaggcttgtttggatgatttcactcatcacaac
attgatgttgcttgcaacctcttggaaacatgtggtcgtttcctatatcgatctcctgaa
actacaattcgaatggcaaacatgttagagattttgatgcggttgaaaaatgtaaaaaat
ttggattctcggcatagtactcttgttgaaaatgcttattacttgtgcaaaccacctgaa
agatctgccagagtttgtaaagtccggccgccattacatcagtatatcagaaaattactt
ttctcagacctggataagtcctccattgagcatgttctgcgccagctgcgtaaattacct
tgggatgaatgtgaaccctatattttaaaaagtttcatgaaagttcacaaggggaagtac
agtcaagttcacttaattgcatcactcactgctggtttgagtcgctatcatgatgacttt
gcagttgcagttgtagatgagcttctggaggagattagactaggattggaattgaatgat
tatgggatgcaacaaaggcgtattgcacacatgcgattcttgggagaactgtacaactat
gcgcatattgaatcatctgtgatattcgagacactttatgtgatacttatttttggccat
gacacaccggagcaagatgtactggatcagcctgaagattgcttccgtattagaatgatt
attacacttcttcaaacatgtggccactactttgacagaggttcttccaagaggaagctt
gacaggtttctgatatattttcagagatatgttctaagcaaaggttcaatacctctagat
attgagtttgacattcaggatctttttgctgatttacgtcctaacatgaatcgctactcc
tccattgaggaagttagtacagctctggttgaacttgaggaacatgagcgtaatgttgca
actgagaaggctaccattgagaagcaaacagcagacattgaatcccacagacctttgacc
cagatgaatccttccatccttgcctcaaatggaccacgctcagttgcaaatggagttgaa
gaaaatggtggggtacacgaagacattgagagcaacagtgattcagatagtgcaagcatt
gatgtggaaggcacccatgatgatgaggaagagctctacgaggataaatcagatcaccat
gatgatgggtgtgacagtgaagatgatgagggtggtgggcccatgggttctgatgaagat
gaagatgttcaagtcaggcaaaaagttgtgcaagttgatcctcaggaagaagttgagttt
gaaagggaactgaaggccttaatgcaggagagcctggattcaaggaaattggaactacgt
ggtagaccaaccctgaatatgatgattccaatgaatgtttttgagggatctaaggatcat
gggagggctggggagggggaaagtggtgatgagacattggatgaagagggcagtggaggg
caaaacaaggtccgtgtgaaggtactggtaaagaagggtcacaagcagcagacaaagcag
atgtttatacctggtgactgtacgcttgtgcaaagcacaaagcagaaagaggcagctgag
ctggaggagaagcagaacattaagaggctgattttggaatacaatgaccgggaggaagaa
tttgttggtggaactggcacccagcctatcaattggatgcagacaggggggagcagacct
tcgggtcgtggtgcatgggaaggagctagcagaccgggtggcatgcgacagcggcatcac
tcatatggactttatggaaggaggaaatga
DBGET
integrated database retrieval system
