Aristolochia californica: 137943123
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Entry
137943123 CDS
T10486
Name
(GenBank) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03040
Spliceosome
Brite
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137943123
Spliceosome [BR:
acak03041
]
Complex C
Other components
Step II factors
137943123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Flavi_DEAD
ABC_tran
Sigma54_activ_2
PhoH
T2SSE
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
137943123
NCBI-ProteinID:
XP_068644920
LinkDB
All DBs
Position
Unknown
AA seq
1202 aa
AA seq
DB search
MATEAIDEGLKKLEYLSLVNKVCTELESHVGCGDKVLAEFITDLGRESETVDEFDAKLKD
NGAEMPDYFVRTLLTIIHAILPPKRKSEGENKKSYEEGKKTEFPALSISDDRERAKKLEK
EIQHEVRQVDGYRDRDSNGGQDQGKGRDRNRDRYTDGDDGRDRYKDGDEGRDRYRDRDGG
RGSDRYRDGYRDDKYGRDERSRDKDDSRVKGSHRSRRDRDGEDDYDRRDDERNPRSGQNG
SRHSDEPELYEVYSGRVSRVMDTGCFVQLNGFKGKEGLVHITQMSRRRVPNAKDVVKRGQ
EVFVKVISKTANKLSVSMKDVDQETGKDLLPMKKSSEDDTYRTNPSSANPGLTIRTGLSG
IPLVEDSNTAPSRRPLKRMSSPEKWEAKQLFASGVFGVRDNPMYDEDGDGLQCHDEGAEE
ELEIELNEDEPPFLQGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQR
TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLAAYDMPEWKKEAYGKTITLGQRSKL
SIQEQRQTLPIFKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCT
QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENL
SQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRADLRLIVTSATLDAEKFSGYFFNCNIFT
IPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDHACQSLYER
MKGLGKNVPELIVLPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVD
PGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTT
VPEIQRINLGLTTLTMKAMGINDLLSFDFMDPPSPQALVSAMEQLYSLGALDEEGLLTKL
GRKMAEFPLEPPLSKMLLASVDLKCSDEILTIIAMIQTQNIFYRPREKQAQADQKRAKFF
QPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLEVLSA
GKDFTSIQKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVVYHELVM
TTKEYMREVTVIDPKWLVALAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKR
RA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggaagccattgatgaagggcttaagaagctggaatatctctctctcgttaac
aaagtatgcacggaactcgaatcacacgtaggttgcggcgacaaggtgttagccgaattc
ataacagacctcggtcgggaatcggagactgttgatgagtttgatgcaaagctgaaagat
aatggggcggaaatgcctgattattttgttcggaccctcttaaccattattcacgctatt
cttcctccaaaacggaaatccgaaggggaaaataagaaatcatacgaagaagggaagaaa
acggagttcccagctctgtccatatcagatgacagggaacgggcgaaaaaactggagaag
gagatccaacatgaggtgagacaggtggatggatatcgagacagagacagcaatggaggt
caggaccaaggaaaaggtagggatagaaaccgggatagatatacagacggagatgatggt
agagacaggtacaaagacggagatgaaggtagagacagatacagagacagagatgggggt
agagggtcagatagatacagagatggttatagggacgataaatacggtagagatgagagg
agtagggacaaagatgattcaagggttaagggaagccatcgtagtcgccgtgatcgagac
ggcgaagatgactatgacaggagagacgatgaaaggaaccctcggagtgggcagaatggc
agtcgtcactcagatgaaccagaactgtatgaagtttattctggcagggtctcaagagta
atggacactggctgctttgttcaattgaatggatttaagggtaaagaaggtttagtccat
ataacacagatgtcaagaaggagggtgccaaatgccaaggatgtagtaaagcgaggtcag
gaagtgtttgtaaaagtcatttcaaagacagctaataagctcagtgtttctatgaaggat
gttgatcaggaaactggtaaagatctccttccaatgaagaagagttctgaagacgacact
tacagaacgaatccatcaagtgcaaatccaggcctcacgattagaactggactctcaggg
atcccattagtggaagacagcaatactgctccatcacggcggccgttgaagcgaatgagt
tcgccagagaaatgggaagctaaacaactttttgcatctggtgtttttggtgttagggac
aatcctatgtacgatgaagatggagatgggctacaatgtcatgatgaaggtgctgaagaa
gagcttgagattgagttgaatgaagatgaacccccatttttacaagggcagagtcgatat
tctatggatatgtcaccagttaaaatattcaaaaatccagagggctcattgagccgtgct
gctgctcttcagtcagctctcataaaggagagaagagaagttcgggaacaacagcagaga
acaatgcttgattcaattccaaaagatctcaatcgtccttgggaggatccaatgcctgag
acaggtgagaggcaccttgcacaggagcttaggggtgtaggccttgcagcttatgacatg
ccagagtggaaaaaggaagcgtatgggaaaactataaccttgggacagaggtcaaaactc
tctatccaggagcagaggcagacccttcctatatttaaattgaaaaaagagctaattcag
gcagtgcatgacaatcaggtgttggttgttattggtgagacaggttctggcaagacaacc
caggtgacccagtacctggctgaagcaggctacacaaccaggggtaagattggatgtact
caacctcgaagagtggctgctatgtcagttgctaagagagtggcagaagagtttgggtgt
cgattaggtgaagaggttggttatgccattcgctttgaagattgtactggccctgatact
gtgatcaaatatatgactgatggtatgcttcttagggagatattggtggatgagaacctg
tcacagtactctgtcatcatgttggatgaggctcatgagagaaccatccacactgatgta
ctgtttggcctactaaaacaacttgtaaaacgaagagctgatcttcgtctcatagtcacg
tctgccacccttgatgcagagaagttctcaggatattttttcaactgcaatatctttacg
atccctggaagaactttccctgttgagatactctacacaaaacagccagaaagtgattac
cttgatgcagctttgattactgtcctgcagattcacttgactgaacctgaaggtgacatt
cttgtcttcttgactggccaagaggagattgatcatgcttgccagtccctgtatgagagg
atgaaagggcttggcaaaaatgttccagaactgatagtattacctgtctacagtgctctt
cctagtgagatgcaatcaaggatcttcgatcctgccccaccaggtaaacggaaggttgtc
gttgccacaaatatagctgaggcatccttgaccatcgatgggatattttatgttgttgat
ccggggtttgcaaaacagaatgtctataatccaaagcagggtcttgattctttagttata
actcccatatctcaggcttcagcaaaacaaagagctgggcgcgcagggcgtacaggccct
ggaaaatgttatcgcctttatactgagagtgcttaccggaatgagatgtcaccaaccacc
gttccggaaattcaaaggatcaaccttggcttgactactctcaccatgaaggctatgggg
attaatgatcttttgtcatttgattttatggatccgccttctccacaagcacttgtctct
gccatggaacagctgtacagtttaggagccttggatgaggagggtctcctgactaaactg
ggtcggaagatggctgaatttccactggaaccaccattgtcgaagatgcttctagctagt
gtggatcttaagtgcagtgatgaaattttaactattatagccatgattcaaactcagaat
atcttctacaggcctagagagaaacaagcccaagctgatcagaagagagccaaatttttc
cagcctgaaggggatcatttaactcttttagctgtttatgaggcgtggaaggccaaaaac
ttttctgggccttggtgctttgaaaactttgttcagtctcgttcattgaggagagcacag
gatgtgaggaagcagcttttgaccatcatggacaagtataaattggaggttctcagtgct
ggaaaggattttaccagtatacaaaaagctattgctgcagggttctttttccatgcagcc
agaaaggatccccaggagggatatcgcaccttggtggagaaccagccggtttatattcat
cctagtagtgcacttttccagaggcaacctgactgggtggtttaccatgaacttgtcatg
accacaaaagagtatatgcgtgaagttactgttattgatcccaagtggttggtagctctg
gcaccaagatttttcaaagtagctgatcctacaaaaatgagcaagcgcaagcgacaagaa
cgtattgaaccactctatgatagatatcatgaaccaaattcttggcgtttgagtaagcgc
agagcatga
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