Aristolochia californica: 137943161
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Entry
137943161 CDS
T10486
Name
(GenBank) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
acak03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137943161
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137943161
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137943161
NCBI-ProteinID:
XP_068644956
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MDDDDRKPNPRNLGYFSDQRVKTTSAAPDLAAQKPTPPILDRFRAMLREREEEVGLTDGD
IGSSIPVEDVVRLYEEVLSELTFNSKPIITELTIIAGEQSQCAEGIAEAICARILEVPVE
QKLPSLYLLDSIVKNIGGDYVRYFAARLPQVFCEAYKKVHPHLHPAMHHLFGTWSAVFPN
SVLRRLEREIQFSPPVTRQPSNITSLEPSKLPSPRPGHGIHVNPKYLEQQQFEQETADAQ
HGKGLSSSLQAYGRKPTIGYSEDDFKHADMLPLQKVGSGRVEPPQILSGHPSTVVATESP
LTKSKAMLMRLSSPPSIELSMPSSPAAGRLVRDMSPASAVDRISPDSRPGLRNGERNGWW
ETYWSEDGTQQRESSSSYQISNGNSQRQQRGLIDSYGNYRAKGILPDKSPMVEQLDVNAI
NNSAATRNWQNVEEEEYDWEDMSPTLADRSRGNDLPGPIHGSLGVNTGSGRPHSDLQPRS
RDWSSHAYLPFADDSSTIFDDRVPLTGSARGPLGKMSSTAGLKNELLSKYGRSGYPQDSW
KLPHSSSQPSVPYVLPKSGTNASMPFPAADGVTLTTQKAPLSIENPQDLDLAIDRILNVR
KRNASSNLDSLHLKGGPALKKHFTQGPHLPPITSMTTPPMAGSHHLAPSVPSPLHQKHHF
VNQGLNKSLLDSVDRNMIHSTEQIPWSHRQARPISLSQPNQAQEYLVPDHALVSSHIVKQ
SLNHSATILGQGAIQKMMVPNLYSGISSSMAANRIPETSLQLHGGAGPPLPLGPLPLLSQ
SGLMSENAASVVANPPGNAFSGLISSLVAQGLISLTAPASQDSLGVEFNVELLKVRHESA
INALYADLPRQCTTCGMRFKCQEEHSSHMDWHVTKNRMSKNQKHNPSRKWFVSAKEWLSG
AEALGTDMAPGFLRTETVVEKRVDEEVAVPADENQNVCALCGEPFEDFYSDETEEWMYKG
AIYMNAPDGSVEGIDRATLGPIVHVKCRSESTAIPLEDFVKDEGVVRFDSTGSTAKLWRL
NCMIGMERGESGDRGGDRLVQFSSLGLAFRPGRGTWSG
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacgaccggaagcctaaccctagaaatctagggtacttctctgatcagcgc
gtcaaaaccacttcggccgcacctgatctcgccgcccaaaaacccactcctcctattctc
gaccgatttcgagcgatgttgagagagagagaggaggaggttggacttactgacggtgat
atagggtcgagcattccggttgaagatgttgtccgcctatacgaagaggtcttatcggag
ttgacgttcaattcgaagccgatcattacagagcttacgattattgccggagagcagagc
caatgtgcggaagggattgctgaagcgatttgcgctcgaattctcgaggtgccagtagag
caaaaacttccttccctatatcttctggatagtatcgttaaaaacattggtggtgactat
gtaaggtatttcgctgctcgtctccctcaggtgttctgtgaggcatacaagaaggttcat
ccccacttacatcctgccatgcaccatctttttgggacttggtcagcagtattcccaaat
tcagtactacgcagacttgagagagagatacaattttctcctcctgtgacccgtcaacca
tctaacattacttctttggaaccttccaaactgccatctccccgtccaggtcatggtatt
catgtaaatccaaaatatctagagcagcagcaatttgaacaagaaacagcggatgctcag
catgggaagggactttcatctagtctacaagcatatgggcgaaaaccaactatagggtac
agtgaggatgatttcaaacatgcagatatgctacctcttcaaaaggttggaagtggaaga
gttgagccccctcaaattctgtctgggcatccatccacagttgttgctactgaaagtcct
ctcacgaagtccaaagctatgctaatgaggctgtcctctcctcctagtattgagctgtca
atgccttcatcaccagcagcaggtaggcttgtaagggatatgtccccagcaagtgctgtt
gacaggatctctcctgattctaggcctgggttaaggaacggagagaggaatggttggtgg
gaaacatattggtctgaggatggcacacagcaaagggaatcttctagttcatatcagatt
agtaatggaaacagtcagcgacaacaaagaggtctaattgattcttatggaaactacaga
gcaaagggtatcttgccagacaaaagtccaatggtggaacagcttgatgtaaatgctata
aataatagtgcagccacaaggaattggcagaatgttgaagaagaagaatatgattgggag
gatatgagtccaactttagctgaccgtagccgtggtaatgatcttcctggtcccattcat
ggtagtttaggtgtgaatactggatctggaagaccacattcagatctgcaaccccgaagc
agagattggtccagtcatgcttacctgccttttgctgatgattcttctactatatttgat
gatagggttcctctcactgggtctgctcgtggaccactcggcaagatgtcatcaactgca
ggcttgaaaaatgagctcctatctaagtacgggcgttctggctatcctcaagactcttgg
aagttgcctcacagttcttcccaaccttcagttccatatgtccttccaaaatctggtact
aatgcttctatgccttttccagcagctgatggggtaactctgaccactcaaaaagcacct
ctttcaattgagaatccacaggatttggatttagcaattgacagaattttgaatgtccgt
aaaaggaatgcttcttcaaatcttgattccttgcatttgaagggtggaccagcactgaag
aagcattttacacaagggccccatttgcctcccattacatccatgacaaccccccctatg
gctggttctcatcatttggcaccttcagtacctagtcctttgcaccagaagcatcatttt
gtgaaccaaggtctaaacaagtctttgttggattctgttgataggaatatgatacattca
acagaacagattccttggtctcatcgacaggcaaggccgatttctttaagtcaaccaaat
caggctcaagaatatcttgttccagaccatgctctggtttcctctcacatagtgaaacag
agtctaaatcattctgctactatactaggtcagggtgcaattcagaagatgatggtaccg
aatttgtattctggaatatcttcatcaatggcagccaatcgtattcctgaaacatccttg
cagttgcatggaggtgctggacctccactgcctctgggaccacttcctttgttgtctcag
tcagggcttatgtccgaaaatgccgcatctgttgtggctaatcctcctggaaatgcattt
tcaggtctgattagttcactagtggctcaaggtttgatttcattgacagcaccggcatca
caggattctttgggtgttgagttcaacgtggaactccttaaagttcggcatgagtctgct
ataaatgctctttatgctgatcttcctcgacagtgtaccacttgtgggatgcgttttaaa
tgccaagaagagcatagcagtcacatggattggcatgtgacaaaaaatcggatgtctaaa
aaccaaaagcacaatccttcaagaaaatggtttgttagtgccaaagaatggctcagtggt
gcagaagccttaggaacagacatggcccctggttttctgcgtacagaaactgttgttgaa
aaaagggttgatgaagaagtggctgttcctgcagatgagaaccaaaatgtttgtgcctta
tgtggggagccttttgaggatttctacagcgatgaaactgaggagtggatgtataaaggg
gccatctacatgaatgcaccagatggatctgtagagggcatagacagggctacactaggc
cctattgtgcatgttaagtgtcgctcagaatctacagctattcctttggaggattttgta
aaagatgaaggggtggtcaggtttgattcaaccggttcaactgcaaaactctggcggttg
aactgtatgataggcatggagaggggggaaagcggggacaggggaggagaccgcttagtt
cagtttagttcccttggtttggctttcagacctgggagaggtacatggtccggttga
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