Aristolochia californica: 137943972
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Entry
137943972 CDS
T10486
Name
(GenBank) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137943972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137943972
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137943972
U7-dependent histone pre-mRNA processing factors
137943972
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
137943972
NCBI-ProteinID:
XP_068645532
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSVDGFNFLVDCGWNDLFDPSLLQPLSKVTSTIDAVLL
SHPDTLHLGALPYAMKHLGLSAPVYATEPVHRLGLLTMYDHYMSRKQVSEFDLFTLDDID
AAFQNVTRLTYSQNCHIAGKGEGIVIAPYVSGHLLGGTIWKITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDAIVKALRADGNILLPVDTAG
RILELLLILEQYWTQHHLTYPIFFLTNVATSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL
LKHVRLLISKSDLEKIPDGPKVVLASMASLEVGFSHDIFVEWATEPKNLVLFTERGQFAT
LARMLQVDPPPKAVKVIMRKRVPLVGEELISYEEEQNRKKEEALKASLVKQEDAKVTQGS
DNVADPMVIDAPSGPVSSDAPSPRFSGQRDIIIDGFVPSTTSVAPMFPFFENSTEWDDFG
EVINPDDYVIKEDNIDQSMIGMNGDLDGKVDEASFIQNLLDTKPSKVISTEMTVQVKCSL
VYMDFEGRSDGRSIKAILGHVAPLKLVLVHGSAEATEHLKEHCAKNVCPHVYAPQIGETI
DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTDGVLSLLPLSTPAPPHRSV
LVGDLKLADFKQFLASKGVQVEFSAGALRCGEYVTLRKVGDSTQKGGGSGTQQVVLEGPL
SEEYYKIREYLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcagttcaggtgacacccctttgcggggtctataacgagaaccctctttct
tacttggtctctgttgacggcttcaacttcctcgtcgactgcggatggaacgatctcttc
gacccttctcttcttcagcccctttccaaggtaacctcgactatagatgcagttttgcta
tcacatccagatacgcttcaccttggtgctttgccttatgccatgaaacacttggggctc
tctgcacctgtttatgcaacagaaccagtccatagactaggtctgttaactatgtatgat
cactatatgtctcggaagcaagtttcagaatttgacttgttcactctggatgacatagat
gctgctttccaaaatgtgacacgtcttacatactctcagaactgtcacatcgcaggaaaa
ggtgagggcatagtaattgcaccttatgtatctgggcatctacttggaggcactatatgg
aagataacaaaggatggggaggatgtaatatatgctgttgacttcaatcatcggaaagaa
aggcacctgaatgggactgtgctagaatcttttgtccgaccagctgtcttgattacagat
gcttataatgctttgaacaatcaaccttccagacgtcaaagggatcaagaatttctggat
gcaatcgtaaaggcattgagagccgatgggaatatactccttcctgttgatacagctgga
cgtattctggaacttcttttgatactagaacagtactggacacaacatcatctgacttat
cctatcttctttctgaccaatgttgcgacaagcacaatcgattatgttaagagtttcctt
gaatggatgagtgactcaatagcgaagtcctttgagcatacccgtgacaatgcttttctt
ttgaagcatgtcaggctcctaataagcaaaagtgaccttgagaagatacctgatgggcca
aaggttgttttagcatccatggccagcttggaagtggggttctctcatgatatatttgtt
gaatgggcaacagaaccgaagaatcttgtgctttttaccgaaagaggccagtttgcaaca
ttagctcgtatgcttcaggttgatcctcctcctaaagctgtaaaggttatcatgcgtaag
agggttcctttggttggagaggagctaatatcttatgaagaggaacaaaacagaaaaaag
gaagaagctcttaaagccagtcttgtaaagcaggaggatgcaaaagtaacacaaggatct
gataatgtggcagatccaatggtgattgatgccccttctggtcctgtttcttcagatgcc
cccagtccacgcttcagtgggcagcgtgacataatcatcgatggttttgttccttctact
accagtgttgctcctatgtttcccttttttgagaactctacagagtgggatgactttggg
gaggtcattaatccggatgactatgtaatcaaggaagataatatcgatcaatccatgatt
ggcatgaatggtgatctagacggaaaagttgatgaagcctccttcatacaaaaccttctt
gatacgaaaccttccaaagttatttcaactgagatgactgttcaagtgaaatgttcattg
gtttacatggattttgagggtcgttctgatgggcgttcaattaaagccatactgggacat
gtggctccacttaaacttgtgcttgttcatggatctgcagaggctactgagcatttgaaa
gagcactgtgcaaagaatgtttgtcctcatgtctatgctccacaaattggggaaactata
gatgtcacctcagacttgtgtgcttataaggttcagttgtctgaaaaactcatgagtaat
gtactcttcaagaagctaggagattatgaggtagcatgggtagatgctgaagttggaaag
actgatggtgtgctttctttgctacctctttcaacaccagctcccccccacaggtccgtt
cttgttggtgatttgaaattggcagatttcaaacagtttcttgcaagcaaaggtgttcag
gttgaattttcagctggtgcactaagatgcggcgagtatgtaaccttgcgaaaagttgga
gattctacccagaagggtggcggtagtggtactcagcaagtggttcttgaaggaccctta
agcgaagaatattacaaaattcgtgagtacttgtattcccagttttatttgctatag
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