Aristolochia californica: 137944730
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Entry
137944730 CDS
T10486
Name
(GenBank) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137944730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acak03041
]
137944730
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137944730
Spliceosome [BR:
acak03041
]
Complex C
Other components
Step II factors
137944730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
IBR_1
Rcat_RNF216
AAA_22
AAA_19
RRM_1
IBR_2
ResIII
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
AAA_29
FtsK_SpoIIIE
Flavi_DEAD
CysG_dimeriser
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
137944730
NCBI-ProteinID:
XP_068646559
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
MSLKASNCSQIRSKYTIELQSGTRTFSKSEAERLISSCDPQPDSFVSYQTGTVAARLVFG
EWARALQAVVFLWRRRLSGHHLFTPEVKFGYVTRSENPEISDRLANLFKSRVRYLLKADI
VSVCQSKIDDLNDEIAHVTQLLGGRNSLLNSHQYLARREELYEQKEQIVRRLDEYKAAML
CILSHLDGPQWESSAQDVEVFEFKGGTKWDRLHRLLARERNRVVEALPIYGHRREILKRF
QTEQAMILIGETGSGKSTQLVQFLVDSGLGGDGLILCTQPRKIAAMSLAQRVRDESNGCY
SDNSITYHSTYFSSQKLNGKVVFITDHCLLQLYMQDTKLRGITCIIIDEAHERTLNTDLL
LSLIKKLMLERRNLKVLAMSATADATKLSDYFGCGVFHVKGRNFPVEIEYVPDESTESSF
TRSCERNRKYFGSYVSNAVKMVTEIHKNEEDGAVLVFLTSQMEVEWACDNVQSPTAVTLP
LHGKLSSEEQNKVFQNYPGKRKILFSTNLAETSLTIPEVKYVVDSGMVKESRFEPGSGMN
LLRVCRISQSSANQRAGRAGRTAPGKCFRLYSELDFQSFSLHQEPEIHRVHLGVAILRII
AIGINTVQDFDFVDAPSQKSVELAIKNLILLGAIRLENNILELTFVGWKLVKMGINPQLG
KLILNSFDHGLGREGIVLASVMANASGIFCRVGDDEEKLKADCLKVQFCHEDGDLFTLLS
VYKKWEEENHLSRNAWCWKNSVNAKAIRRCRETVLELENCLQQELHIIIPTYWKWNPHGP
TEYTKVLKNVILSSLSENIAIYSGSNQLGYEVASTGQHAQLHPSCSLRIYGQNPTWVVFG
EILSTSNQYLLCVTSVERDSLLSIWPSLPLDILFLESQKLQKHVINDVGNNLLRRFCGKS
NSKLQNIISYIQRDCRDDRIHIDVDFDRREIHLFNSLTSAKRASTFLNWIVENEKTLLRN
ECNEKCLFSVGPGFYPSVALFGSGATIKHLEVEGRYFSVEVFHPNAHSLDDRELLSVFNK
VATGIASFHRQRSWGKEGENLEKWGKVTFLNPQGAENAVEELNGVEIIGSPLKVVPLPVA
SSEHRTFPFPALTAKLTWPRRNLKGVAVVRCASEDVPFIAQVCESMVIKGRFVRCEISNK
YTNSVIVTGLRKDITEQEIFEAFLTETNRTILDVFLPRSQPVCKPSSDSCADVLRREIAH
FMPEKSCPTKNFWVKVFPPEPKDYLMKAVVTFDGGLHLEAAKALHHLHGKVLDGCLSWQN
LECHQMFQSSVSCPAEVYPIIKQELTHLFENFKHLKGVTYNMEQNGNGPYRVKICANATR
TVAKLRKPLEQLMKGKTISHADLTPGVLQLLFNKKGIEMMKAVQKETRTYILHDKRNLLI
KVFGPPKAVAVAEDILIKSLLHLHESKQLEVHLRGSNLPHRLMKEVVERFGADLEGLKQK
VPGADFKLNTRRHLISVKGSKESKQKVEEAILEVVQSLGDIHPVPVDMEPMCPICLSEVE
DCYNLEDCGHGFCRNCLVDQCESAIRNHEGFPLSCAQDGCKREILLVDLRSLLPGDKLEE
LFRASLGVFVDSSSGAFRYCPSPDCPLVYRVADPKTTDEQPPFSCGACLVETCRRCHLEY
HPSVSCEMYKEFKENPDLSLKEWCKGKDNVKNCPECQSTIEKEEGCNHIACRCGSHICWV
CLSWFHSSDKCYLHLREVHETII
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgaaggcttcgaattgcagtcaaatccggtccaagtacacgatcgagctccaa
tccggcacccggacattctctaaatcggaggcggaaaggttaatctcctcctgtgatcct
cagcccgatagtttcgtctcctatcaaacaggtactgtcgccgcaaggttggtttttggg
gaatgggctcgggcgctccaagcggttgtttttctctggcgccggcgtcttagtggtcac
catctattcaccccagaagtgaaatttggttatgtgactcggtctgaaaaccccgagatt
tctgatcgtcttgccaacctctttaagtcccgggtccgataccttttgaaagctgacatt
gtgtcagtctgccagagtaaaatagatgatttgaacgatgagattgcacatgttacgcaa
cttctggggggacgtaactcgttgcttaattctcatcagtatcttgccagaagagaagag
ctctatgagcagaaagaacagattgtcagaaggcttgatgagtacaaggctgccatgctg
tgtatattgtctcatcttgatggtcctcagtgggaaagctccgctcaggatgtggaggtc
tttgagtttaagggtggcacaaagtgggatcgtcttcataggttgttggctcgggagcgc
aacagggtggtagaggctttgcccatttacggtcacaggagggagatcttaaagcgattc
cagacggagcaggcaatgatcttgattggagaaacaggttcaggaaagagtacccaattg
gtgcaatttcttgttgattcaggacttggtggtgatgggttaattctttgtacgcaaccc
agaaaaatcgctgccatgtctttagcccaaagggttagggatgagagtaatgggtgctat
tcagataactctattacttatcattcaacatatttttcatctcagaagctcaatggcaag
gtagtatttataactgatcattgtctcctgcaactctacatgcaagatacaaagttgagg
ggcataacttgcataattattgatgaagcacatgagagaactttgaatactgatctccta
ttgtctttgattaaaaagctaatgcttgaaagacgtaatttaaaagttcttgcaatgtcg
gcaacagctgatgctaccaagctctctgattactttggctgtggtgtttttcatgtcaag
ggaagaaacttccctgttgaaatcgagtatgtccctgatgagtcaactgagagttcattt
acaagaagttgtgagcgaaatcgtaagtattttggttcatatgtttccaatgcagttaag
atggtgactgagatacacaaaaatgaggaagatggggcagttcttgtgtttttgacttct
caaatggaagtagagtgggcatgtgacaatgtccagtctcctactgctgttacattacca
ttgcatggtaaactctctagcgaagagcaaaataaggtctttcagaattatcctgggaaa
agaaagattcttttctcgacaaatttggcagagacttctctgaccattccagaggttaaa
tatgtggttgattcaggcatggtcaaagagagcagatttgaacctgggagtggaatgaat
ctgctcagggtttgcagaatcagccaaagttcagcaaatcagcgtgctggccgtgcaggg
cgaacagctccaggtaaatgttttcggctatattcagaattggatttccaatccttttca
ttacatcaggagcctgaaatccacagggtccaccttggtgttgctatcttaaggattata
gctattggaattaacacagtacaagattttgattttgttgatgcaccaagccagaagtca
gttgaattggctattaagaatttaattctattgggtgctattcgtttggaaaataatatc
ttggaactgactttcgttggttggaaattggttaaaatgggtattaaccctcagcttggc
aagctaattcttaatagttttgatcatgggttgggaagagaaggcattgttcttgcttct
gttatggcgaatgccagcggtatattttgccgggttggggatgatgaggaaaaattaaag
gctgattgcttaaaagtacaattttgccacgaagatggagacctcttcactcttctttct
gtttataagaaatgggaagaagagaatcacttgagtagaaatgcttggtgttggaaaaac
agtgtaaatgcaaaagccatacgaagatgtagagagactgtgcttgaactagaaaattgt
ctccaacaagagctacatattatcattccaacttactggaagtggaaccctcatggacct
actgaatatactaaagtcttgaagaatgtcatactttcttctctctcggagaatattgct
atttactctggatcgaatcagcttggttatgaagtggcatctacaggacaacatgcacaa
ctccatccttcgtgttctttgcggatatatggtcagaatcccacttgggtagtctttggt
gaaattctatccacatctaatcaatatttactttgtgtcacttcagttgagagagatagt
ttgctctcaatttggcccagtctccccttagatattttgttcttggagagccaaaaattg
caaaaacatgttattaatgatgttgggaataacttgttgagaagattctgtgggaaatca
aactccaaactgcaaaacatcatttcttacattcaaagagattgtagggacgaccgtata
catattgatgttgattttgacaggcgagagattcacttatttaattcattgacatctgcc
aaaagagcttccacctttctgaattggattgtggaaaatgaaaaaacattgttgagaaat
gaatgtaatgaaaaatgcttattcagtgtaggacccggtttctatccatcagtggcgttg
tttggttctggtgccacaattaagcatcttgaagtggagggtagatatttttctgtggaa
gttttccatccaaatgcacattctcttgatgacagggagcttctttctgtgttcaacaaa
gttgctactggcattgccagtttccataggcagaggtcttggggcaaagaaggtgagaac
ttggagaagtggggaaaagtcacatttcttaacccacaaggtgctgaaaatgctgttgaa
gaactaaatggcgtagaaatcattgggtcccccctaaaagtagttcccttaccagttgca
tcaagtgaacatagaacttttccttttcctgcattgacggccaagctaacctggccaagg
aggaatttaaaaggtgttgcagtggttcgatgtgcaagtgaggatgtgcctttcattgct
caagtgtgtgaatccatggttattaaagggaggtttgttcgttgtgaaattagcaataaa
tatacgaactctgttattgtgactgggcttcgtaaagatatcactgaacaggaaatattc
gaagcttttttgactgagacaaataggacaatattggatgttttccttccgagaagccaa
ccagtttgtaagccttccagtgattcttgtgcagatgtgcttcgtagggagattgctcat
ttcatgcctgagaagtcgtgccccaccaagaatttctgggttaaagtgtttcctccagaa
ccaaaagattatctgatgaaagctgtggtcacttttgatgggggtcttcatcttgaggca
gcaaaagctttgcatcatctacacggaaaagttctcgatgggtgtctttcatggcagaac
ctagagtgccatcagatgttccaaagctcagtatcttgccctgcagaagtttatcccatt
atcaagcaagagttgacacatttatttgagaacttcaaacatctgaaaggtgtaacctac
aacatggaacagaatggcaatggcccatatcgagtgaagatatgcgcgaatgctaccaga
acagtcgcaaaattgagaaaacccctggagcagttgatgaaaggtaaaaccattagtcat
gcagatctcactcccggtgtgctgcagttgctcttcaacaaaaaaggcattgaaatgatg
aaggcagtccagaaagagacaaggacatatattctacatgataagcggaacctactcatc
aaagtgtttggtcctcccaaggcagttgctgtggctgaggacatcttgataaagtccttg
ttgcatcttcatgaaagcaagcaacttgaagtccacctccggggaagtaacctcccacat
cgtttgatgaaagaagtggttgaaagatttggagcagatctagagggtctgaagcagaaa
gtgccaggggcagacttcaagcttaatacacgtcgccacttaatttctgttaaaggaagc
aaggagtcgaagcaaaaggtagaagaggcaattctagaagtagtccaatcccttggtgac
atccatcctgtgccagtcgacatggaaccaatgtgcccaatttgcttgtctgaggttgaa
gattgttacaatcttgaagattgtgggcatggtttttgcagaaattgcttggttgatcag
tgtgaatctgcaataagaaatcatgaggggttcccactatcgtgtgctcaagacgggtgc
aagagggaaatactgcttgtagatctcagatctcttctgccaggcgataagttggaagag
cttttcagggcttcattgggggtgtttgtagactctagttctggggcctttaggtactgc
ccatctcctgactgtccattagtttatcgggttgcagaccccaagacaacagatgagcaa
ccaccattctcatgtggggcatgcttggtcgagacttgcagaagatgtcatttagagtac
catccttcagtatcttgtgagatgtacaaagaatttaaggaaaacccagatttatctctg
aaagagtggtgcaaggggaaggataatgtgaagaactgtcctgaatgccagtcaactatt
gagaaggaggaaggttgtaatcatattgcatgcagatgcggaagtcatatttgttgggtt
tgcttgagttggtttcattctagtgataaatgttatctgcatttgagagaagtgcatgaa
acaattatatga
DBGET
integrated database retrieval system
