Aristolochia californica: 137944868
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Entry
137944868 CDS
T10486
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acak Aristolochia californica
Pathway
acak03020
RNA polymerase
acak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
137944868
09124 Replication and repair
03420 Nucleotide excision repair
137944868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acak03021
]
137944868
03400 DNA repair and recombination proteins [BR:
acak03400
]
137944868
Enzymes [BR:
acak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
137944868
Transcription machinery [BR:
acak03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
137944868
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
137944868
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
137944868
NCBI-ProteinID:
XP_068646751
LinkDB
All DBs
Position
Unknown
AA seq
1830 aa
AA seq
DB search
MDTRFPYSPAEVAKVKMVQFGILSPDEIRQMSVVQIEHSETMERGKPKPGGLSDLRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSILRSVCFNCSRIIGREDNHK
FKQALKVKNPKHRLKRVLDACKNKQKCGDELNVPVQESDEPMKNQGGCGAQQPKFTIEGM
KIIAEYKQKKKSDDTEQLPEPVERKQVLSAERVLSILKRISDEDCSLLGLNPKYARPDWM
ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ
LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT
PDPTINIDELGVPWSIALNLTYPETVTPYNIDRLKELVEYGPHPPPGKTGAKYIIREDGQ
RLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN
LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC
RKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRQ
SAWHLESETGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL
GHTQWLVNYWLLQNAFSIGIGDTIADANTMEKINETIQKAKNEVKELIKAAQEKQLEAEP
GRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG
QQNVEGKRIPYGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID
TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSL
KMKKLEFDKVFRYEFDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEGDRYQLGSE
IVTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGEDP
MSIEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFEWVIGEVESRFLQSLVAPGEMIG
CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVN
KTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEK
ISPWLLRVELNREMMVDKKLSMADIAEKINIEFDDDLTCIFNDDNAEKLILRIRIMNDDA
PKGELEDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKINKFEDIDGFKPEMEW
MLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVN
YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAALYAEVDHLRGV
TENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYLEGLDFVTTPSRSPITGTPYTEA
GLMSPYSMSPNVRASPMTDAQFSPYIGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY
SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPVYSPTSPVYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPSLAYSPSSPR
LSPSSPYSQSSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPYNSGTGPDYSPSSPQYSPSA
GYSPTAPGYSPSSTSQYTPQFTNKDEDVTK
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcggtttccatactccccggcggaagtcgccaaggtcaagatggttcagttc
ggcatcctcagccccgatgaaatcaggcaaatgtcagtggtgcagatcgagcacagtgag
accatggaaagaggtaagcctaaaccagggggtctcagtgacctaaggcttggtacaatc
gatcgaaagttgaaatgcgagacctgcacagcaaatatggcagagtgtcctggccatttc
gggcaccttgagcttgcgaagcctatgtttcacataggcttcttgaagactgtgctgtcc
attctgcgatctgtttgcttcaactgctctagaattattgggcgtgaggataaccacaag
ttcaagcaagctttaaaagttaagaacccaaagcatcggctgaaaagagttctcgatgcc
tgtaaaaataagcaaaaatgtggagatgagcttaacgttccagttcaagaatcagatgaa
ccaatgaagaaccaaggtggttgtggggcccaacaaccaaaatttaccattgaaggtatg
aagataattgcagaatacaagcaaaagaagaagagcgatgacacagaacaacttcctgaa
cctgttgagagaaaacaagtgctttctgcagaaagggtacttagtattctaaagcgaatt
agtgatgaggactgtagccttttgggattgaatccaaaatatgcccggccagactggatg
atactgcaagttttgccaattcctcctcctcctgtgagaccttctgtgatgatggataca
tcttcacgaagtgaggatgatttgactcatcaactggctatgatcattagacacaatgaa
aacctcaggaggcaggagaggaatggggctcctgcccacatcatctcagagtttgctcag
ttgctgcaatttcacattgccacgtattttgacaatgagctgcctggtcagcctagggca
actcagcggtcaggaagacctatcaaatctatatgcagtagacttaaggcaaaagaaggt
cggatcagaggtaatttaatggggaagcgtgtggatttttcggcacgaactgtcatcaca
ccggatccaactattaacattgatgaattgggggttccttggagcattgctctaaatttg
acttatcctgaaactgtgactccgtataacattgacagattgaaggagcttgtggaatat
ggtcctcatcctcctcctggcaaaactggtgccaagtacattataagagaggacggacag
aggctggatcttcggtacttgaagaaaagtagtgatcatcatctggagcttggatacaag
gtggagaggcatttgatagatggggactttgttcttttcaaccgacagcctagtcttcat
aaaatgtccatcatggggcaccgcatcaagattatgccatactcaacttttcggttgaat
ttgtctgtgacttctccttacaatgctgattttgatggtgatgaaatgaacatgcatgtg
cctcagtcttttgagacgagagcagaagttttggaactgatgatggtacctaaatgcatt
gtttcgccccagtcaaaccgtcctgttatgggcattgttcaggacactctcttggggtgt
cgtaagatcactaaaagagataccttcatagagaaggatgtatttatgaacatcttgatg
tggtgggaagattttgatgggaaagtacctgctcctgcaattctgaagcctcggcctctt
tggactggaaagcaagtatttaatcttataataccgaagcagataaatctcctaagacaa
tcagcatggcacttggaatctgagacaggatttataacccctggagatactcaagttcgg
atagagaaaggagagcttctttcgggcaccctgtgcaaaaagaccctagggacatcaact
ggcagtctcattcatgttatatgggaagaggtgggtccagatgcagcccggaagtttttg
gggcacactcaatggcttgttaactactggctactacaaaatgctttcagtattggaatt
ggggatactattgctgatgccaacacaatggaaaaaataaatgagacaattcagaaggca
aagaatgaagtgaaagagctaatcaaggctgcacaagaaaagcagttggaggcagagcct
gggcggactatgatggaatcatttgaaaatagagtgaatcaggttttgaataaggctcga
gatgatgctggcagtagtgcacagaagagcttgtctgagagtaacaatcttaaggcaatg
gttactgctggatcaaaaggaagttttatcaacatctcgcagatgactgcttgtgtggga
caacaaaatgttgaagggaaacgtattccttatgggtttaatgatcggactttacctcat
ttcaccaaagatgactatgggcctgaaagtcgtggttttgttgaaaactcatatctgcgt
ggactgacacctcaggagttcttcttccatgcaatgggtggtagggagggtcttatagat
acggctgtgaaaacctctgaaactggctatattcaaagaagacttgtgaaggctatggaa
gacattatggtcaaatatgatggtactgtcaggaactcgttaggtgatgtaattcaattt
ctttacggagaagatgggatggatgctgtttggattgaaacacagaaactggactccttg
aagatgaagaaattggagtttgataaagtttttaggtatgagtttgatgatgataattgg
aatccgagctacatgttacctgagcatgttgaggatttgaagaccatcagagagttccgt
aatgtgtttgatgctgaagttcagaaactggaaggagatcgataccagcttgggtctgaa
atagtgacaacaggtgataactcatggcccatgcctgtgaatctgaagagactgatctgg
aatgcacagaagacatttaaggttgacttgagaaggccatccgatatgcatccaatggag
attgttgaagcagttgataagcttcaagaaagattgaaggttgtccctggagaggatcca
atgagcattgaagctcagaaaaatgccactctcttcttcaacatacttcttcggagcaca
ttggcgagcaaacgtgttttgaaggaatacagactaactcgggaagcatttgaatgggtg
attggtgaggtagagtctagatttttgcagtcgcttgttgcccctggtgaaatgatagga
tgtgtggctgctcagtctattggtgagccagctactcagatgaccctaaacaccttccac
tatgctggtgtgagtgccaagaatgtcactcttggtgttccgcggttgcgggaaattatt
aatgttgcaaagaaaatcaagactccttcactgtctgtttacttgaagcctgaggttaac
aaaacaaaagagaaggccaaaaatgtccagtgtgctttggagtacaccacattgcgtagt
gtgacacaagcaacagaagtttggtatgatcctgaccccatgagcacaattattgaggaa
gatgttgattttgtcaagtcatactatgaaatgccagatgaagaggttgccccagaaaag
atatctccttggcttctgcgtgttgagctgaaccgtgaaatgatggtggataagaaactc
agcatggcagatattgccgagaagatcaacattgagtttgatgatgacttaacatgcata
tttaatgatgataatgcagaaaagctcatccttcgtattcgtattatgaatgatgatgct
cctaaaggtgagttggaagatgaatctgctgaagatgatgtcttccttaagaagattgaa
ggtaacatgttaacagagatggcccttcgaggaattcctgacatcaataaggtgttcata
aagtcaggaaagattaacaaatttgaggatattgacggatttaagccggagatggagtgg
atgctggatactgaaggtgttaatctgctggcagttatgtgtcatgaagatgtggatgcc
agaaggactaccagcaaccatttgattgaagtaattgaagtacttggaattgaggcagtt
cgtcgatctcttcttgatgagttgcgtgtggtcatatcttttgatgggtcctatgtgaac
tatcgacatctggctattctctgtgacacaatgacttacaggggacacttaatggccatc
acccgtcatggtattaatcgcaatgatacaggcccaatgatgagatgctcatttgaggaa
actgtagacattcttctggatgctgcactatatgctgaagtagatcatctcaggggtgtt
acagaaaatatcatgcttgggcagcttgctcccataggcactgggggctgtgccttgtat
ctgaatgaccagatgcttcagcaggcaattgagctccagcttcctagttacttggaaggg
ttggatttcgttacgactccatctcgttcaccaattactggcactccatatactgaagct
ggcttgatgtcaccttattcgatgagtccaaatgtccgagcttcaccaatgacagatgct
caattttctccttatattggtgggatggcattttctcctacttcttcaccaggctacagt
ccatcatctccaggctacagtccgtcatctccaggctatagtcctacgtctcctggatat
agtccgacatctcctggttatagtcctacatcacctggttatagtcccacctcccccaca
tatagccccagctctccaggatatagccctactagccctgcttactcccccacaagtcca
tcgtattcacctacctcaccaagctacagtccaacatcacctagttacagtccaacttcg
cctagttacagccctacttcacccagttacagtccaacttcgccgagctacagtcctaca
tcaccggtttacagtcccacttctcctgtgtatagccctacttctcctgcatacagtcct
acatcaccatcttacagtcccacatctccttcatacagccccacttcaccttcctacagt
cctacatctccctcctatagtcccacctctcctgcctatagtcctacgtctcctgggtat
agtcctacatcccctagctacagtccaacctctcccagctatagcccaacgtcaccaagc
tataatcccccttcagcaaaatatagtccatctctggcatactccccaagcagtcccagg
ttatctccttctagtccatacagtcagtcatcaccaaattacagccctacatcaccatca
tattcacctacttctccatcctattctccacctagtcctacatatagcccgagcagccca
tacaattcaggcactggtccagattacagcccaagttctcctcaatacagccctagtgcc
ggttactcgcctactgcgccaggttactctccctcttcaacaagccaatacacgccacaa
ttcaccaacaaggatgaggacgtcacaaagtaa
DBGET
integrated database retrieval system
