Aristolochia californica: 137945686
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Entry
137945686 CDS
T10486
Name
(GenBank) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137945686
09122 Translation
03013 Nucleocytoplasmic transport
137945686
03015 mRNA surveillance pathway
137945686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137945686
03041 Spliceosome [BR:
acak03041
]
137945686
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137945686
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137945686
Spliceosome [BR:
acak03041
]
Complex C
Other components
EJC/TREX
137945686
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137945686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
YihI
Motif
Other DBs
NCBI-GeneID:
137945686
NCBI-ProteinID:
XP_068647764
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVRDAEAYEEELLDYEEEEDKGPDSVTAKGTGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFQRFSTYLPDIKVAVFYGGVNIKTHKELLKNECPHIVVGTPGRILA
LAREKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLIECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgagggatgccgaagcgtacgaggaggagcttctcgactacgaagaggag
gaggacaaagggccggattctgtcactgccaagggtactggggaatctgcaaaaaagggc
tatgttggaattcatagttcgggattcagagattttcttttaaagccagagcttcttcga
gccattgtagattcaggattcgagcatccttcagaagtgcaacatgaatgcatcccacag
gctatcttggggatggatgttatctgtcaagcgaagtctggaatgggtaaaactgctgta
tttgttctttcaacacttcaacaaattgagcccgttgctggtcaagttgcagctcttgtg
ttatgccatacaagggaattagcttaccagatttgccacgaatttcagaggtttagcacc
tatttgcctgatattaaagttgctgtgttctatggtggtgtgaatatcaaaacacacaag
gagttactcaagaatgagtgtccacatattgttgttggaactcctggaaggattctcgct
ctagcaagagaaaaagatctcgcactgaagaatgtgaggcattttatccttgatgaatgt
gacaaaatgctcgagtccctagacatgcgaagagatgtccaagaaattttcaagatgaca
cctcatgataaacaagttatgatgttttcagccactcttagcaaggagatccgcccagtt
tgtaagagatttatgcaagatcctatggaaatatatgtagacgatgaggccaagttaacc
ttgcatggtcttgtacagcactacattaaattgacggagttagaaaagaatcgcaagttg
aatgatctgctggatgcattggactttaaccaagttgtcatctttgtgaaaagcgtcact
agagcagctgagctgaataagcttcttatagagtgcaatttcccatcaatttgcatccac
tcaggcatgacgcaggaagaaaggttgacacggtacaagaacttcaaagaagggcataaa
aggattctggtggcaacagatttggttggaagaggaattgatattgagcgcgttaacatt
gtggtcaactatgacatgccagattctgctgatacatacttacacagggttggtcgagct
gggcgttttggcaccaaggggcttgccataacatttgtatcttctgcctcggattcagag
gtcctcaatcaggtccaggagcgatttgaggtggacataaaggagcttcctgagcagatt
gatacttctacttacatgccctcgtga
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