KEGG   Aristolochia californica: 137946180
Entry
137946180         CDS       T10486                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
acak  Aristolochia californica
Pathway
acak03030  DNA replication
acak03410  Base excision repair
acak03420  Nucleotide excision repair
acak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    137946180
   03410 Base excision repair
    137946180
   03420 Nucleotide excision repair
    137946180
   03430 Mismatch repair
    137946180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acak03032]
    137946180
   03036 Chromosome and associated proteins [BR:acak03036]
    137946180
   03400 DNA repair and recombination proteins [BR:acak03400]
    137946180
DNA replication proteins [BR:acak03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    137946180
  DNA Replication Termination Factors
   ELG1-RFC complex
    137946180
Chromosome and associated proteins [BR:acak03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    137946180
DNA repair and recombination proteins [BR:acak03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     137946180
  Check point factors
   HRAD17(Rad24)-RFC complex
    137946180
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_22 Rad17 RuvB_N AAA_11 Mg_chelatase AAA_16 AAA_5 PhoH AAA_14 nSTAND_NTPase5 SLFN-g3_helicase AAA_assoc_2 ResIII AAA_2 nSTAND3 AAA_24 DNAX_ATPase_lid AAA_28 AAA_7 AAA_19 Gp44_lid AAA_25 AAA_30 AAA_18 NPHP3_N RNA_helicase Parvo_NS1 NB-ARC TIP49 DUF815 bpMoxR
Other DBs
NCBI-GeneID: 137946180
NCBI-ProteinID: XP_068648492
LinkDB
Position
Unknown
AA seq 341 aa
MAPVVQSFQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGGRQGIYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRIIHICKEEGLNVDAEALTTLSSISQGDLRRAITYLQGAARLFGSSISARDLISVSGVV
SPDVVMALFLVCKSGEFEMANKEVSNIIAEGYPVSQMLSQLFDVIVEAEDITDEQKARVC
KRLAEADKCLVDGADEYFQLMDVASNTMRALCNMPEEFCYE
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgcctgtagttcagagctttcagccctgggtggagaaatatcgtcccaaacaggtg
aaagatgtcgctcaccaggacgaggttgtccgcgtcctcactaacacccttgaaacttcc
aattgccctcacatgctcttctatggtcctccgggaacagggaagaccaccacagctctt
gctattgcacaccaattatttggtcctgaactctataagtcgagagtactggagctaaat
gctagtgatgatcgtggaataaatgttgtacgaactaagatcaaggattttgctgctgtt
gctgttggttctggtggccgccagggaatttatccctgtcctccttttaagattattata
ctggacgaggctgattcgatgactgaagatgctcagaatgctttaagacgtacaatggaa
acatactccaaagtgacacggttcttcttcatttgtaactacatcagcaggataatagag
ccactggcttcaagatgtgcaaagtttagattcaagcctctatctgaagaaatcatgagt
agccgcatcatacacatttgcaaagaagagggcttaaatgtggatgctgaggctcttaca
actttaagctctatttctcaaggtgatctccgtcgagctataacttatttgcagggagca
gctcgtttatttggatcatctatttcagccagggatctaattagtgtgtctggggttgtc
tcaccagatgttgtcatggctctctttttagtttgtaaaagtggagaatttgaaatggca
aataaggaagtcagcaatattattgctgaaggatacccagtttcacagatgctttctcag
ttgtttgatgtaattgttgaagcagaggatatcacggatgaacagaaggcaagggtctgc
aagaggctggctgaggcagataagtgtctggtcgatggagcagatgagtattttcagcta
atggatgtggcaagtaacacaatgagagctctttgtaacatgcctgaggagttttgctat
gaatag

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