Aristolochia californica: 137947843
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Entry
137947843 CDS
T10486
Name
(GenBank) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137947843
03015 mRNA surveillance pathway
137947843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137947843
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137947843
5.6.2.5 RNA 5'-3' helicase
137947843
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137947843
mRNA cycle factors
Common to processing body (P body) and stress granule
137947843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
137947843
NCBI-ProteinID:
XP_068649746
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MAAQTVVPNNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWLSSSDS
VPDQADRPADLQTDAGAASTPSPNASKARGGSNSPAVDALPAGMGNLNFEETGEDESYEF
GKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLQDLEKPGVDDEPQP
VALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDSVTIRWDIGLNKKRIAYFVFPKED
NELRLVPGDELRLRYSGDATHPAWQSVGHVIKLTAQEEVALELRACQGVPVDVNHGFSVD
FVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNALPRRFGAPGLPELN
ASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL
VLGVKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRMHPCLSE
FPSNSFYEGTLQNGVTINERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
ANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLLFGGGPGALSNDTFSSLGSSSPNAD
KRGNRGKGHSYMQFGPPNGTHKPGLHPAGFAVPRIPLPQFPGGPHSQPYSIPTRGAVHGP
IGAVPQVPQAGIRGFGAGRGNAGGPIGGHLSHQQGSQQPIGNLRTSFNFPALENPNSQPS
VGAPLSQTGLMTQMPVQGLSQTFREGFSMGGMSQDFLGDDFKSQGSHVAYNVPDFSTQAS
QSGYGVDYVARGTQTGFPGSFLNQNTQGGYSHLGTGNDFISQDYMPHGSQGLFTQVSFNE
HQQDESSQSHFGVPGPSPLQSQGLMNPLYSQPFTQYNSQPINLQTAQQQQGQTAQNQKLH
YNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcagacggtcgtccctaacaatctctatgaaacggcgtcgcagccggacact
ggcggagatgcgtacaccttcctcgagttcaatacccagggcgacgactatgactatcct
gaattccgggagctctcgcagcccattcgttcctcggtttggctttcctcctctgactcc
gtacctgaccaggctgatcgccccgctgatctccagaccgatgccggcgccgcttccacg
ccctcgcccaacgcgtctaaagcgcgaggtggcagcaattctcccgccgtggatgcactt
cccgccgggatgggcaacttgaattttgaggagacgggtgaggatgaaagttatgagttt
ggaaagggggattttacggagcatgcttgccgatactgtggggtgcagaaccccgcctgt
gttgtgaggtgtaacgtcccttcttgccgcaagtggttttgtaactcgaggggaaacact
tcgggctcacatattgttaatcacctggtccgtgcaaagcacaaggaagtttgtcttcat
aaagatagccccttgggggaaacaatccttgaatgttataattgtggttgccgaaatgta
ttccttttggggtttatatctgccaagactgagagcgtagttgttctcttatgtcgtgag
ccttgtctgagtgtcaatgcactgaaggacatgaactgggacttgagccagtggtgccca
cttattgacgataggtgtttcttgcaatggcttgtgaagatcccatctgaacaggagcag
ttgagagcacgacaaattagtgctcagcagatcaataaagtagaggaattatggaaaaca
aatcctgatgctagtcttcaagatcttgagaagcctggagtagatgatgaacctcaacct
gttgctttgaagtatgaagatgcctaccagtatcaaaatgtgtttgccccacttgtcaaa
cttgaagccgactatgataaaatgatgaaagaatcccaaagtaaggatagtgtaaccata
cgttgggatattggtttgaataagaagcggattgcgtactttgtattcccaaaggaagat
aatgagttgcggcttgttccgggcgatgagttgcggctacgttattcaggtgatgcaaca
catcctgcatggcagtcagtggggcatgtgatcaagctaactgcacaagaggaagttgca
cttgaactacgtgcttgtcagggtgttccagttgatgtgaaccatggcttcagtgttgat
tttgtctggaagagtactagctttgatcgaatgcagggagcaatgaagacttttgctgtt
gatgaaacaagtgttagtggctatatatatcatcacttgctggggcatgaagttgaactt
caggttgttcgtaatgcactacctcgtcgttttggtgctcctggccttcctgaacttaat
gcttctcaggtgtttgctgttaagagcgtccttcagaagcctatcagtttaatacagggt
cctcctggtacagggaaaactgttacgtctgctgccattgtgtatcatatggcaaaacaa
ggccaggggcaggtcttagtttgtgcccctagtaatgttgctgttgatcagcttgcagag
aagattagtgctactgggttgaaggtagtcagattatgtgcaaaatcaagggaagctgtt
agctcacctgttgagcacttgacactacactatcaggtcaggcatcttgacacttctgaa
aaaagtgaactgcacaagcttcaacaattgaaagatgaacaaggggaactatcaagcagt
gatgaaaagaagtacaaggctctgaaacgtgctactgagagggaaatatcgcagagtgct
gatgtcatttgctgcacatgtgttggtgcaggtgatcctcgattggcaaacttcagattt
cgccaggtgcttattgatgagtctacccaggcaacagagcctgagtgtcttatccctttg
gttctcggggtcaaacaggttattttagttggggaccattgtcaactaggtccagtgatt
atgtgcaagaaagcagctcgtgctggtctagctcagtccctctttgagcgtcttgtacta
cttggagtgaaaccttttagattgcaggttcaatatcgaatgcatccttgtttatcagaa
tttccttcaaacagcttctatgaaggtacccttcagaatggggtgaccatcaatgagagg
caaacaactgggatagactttccctggcctgtgccaaatcgtccaatgttcttttatgtt
cagatgggacaagaggagataagtgccagtgggacatcctacctaaatagaactgaggct
gcaaatgtggaaaaaattgtcaccacatttctgcggagtggtgtgattcctagtcagata
ggagttataacaccatatgaggggcaaagggcgtacattgtgaactatatgtcaagaaat
ggggctcttagacagcagctttacaaggaaattgaggtcgcaagtgttgattcttttcag
ggaagggagaaagattacataattttgtcctgtgtgaggagcaatgaacatcagggaatt
ggatttcttaatgacccaaggaggctgaatgttgcattgacccgtgctcgttatggaatt
gttatattggggaatcctaaggttcttagcaaacaacccctatggaacagcttattgact
cactataaggaacatgaatgtcttgttgagggtccacttaataatttgaagcaaagcatg
gttcagtttcaaaagccaaaaaagatttacaacgatcgccgacttctgtttggtggtgga
cctggggcattgtcaaatgataccttcagttctcttggttcatcaagtcctaatgctgat
aaaaggggtaatcgtggaaaaggtcattcttatatgcagtttggaccacccaatggtacc
cacaaacctggtcttcatccagctggatttgctgtgccacgaatccctctccctcaattt
cctggtggaccacattctcaaccatattctattccaactcgtggggctgtccatggacca
attggtgctgttcctcaggtgccgcaggcaggaatcaggggttttggagctggacgaggc
aatgctggcggtccaataggtggtcatctctctcatcagcaaggttcccagcaacctatt
gggaatctaaggacatcctttaattttcctgctttggaaaatccaaatagtcaaccatct
gttggggccccactatctcaaacaggacttatgactcagatgcctgttcagggtctgagc
cagacattccgtgaaggattttctatgggcggcatgtctcaggattttcttggtgatgac
ttcaaaagccaaggatcacatgttgcatataacgtgccagatttttctacacaggcttct
cagagtgggtatggagttgattatgtcgctcgaggaacccagactgggttccctggaagc
ttcctcaaccaaaatactcagggtggatattctcacttgggcactggaaatgacttcata
tctcaggactacatgcctcatgggtctcaaggtctatttacacaagttagctttaatgag
caccagcaagatgaatcttcacaatcacactttggtgtaccaggcccaagtcctcttcaa
tcacagggcctaatgaatcctctctactctcagccattcacacagtataactctcagccc
ataaacttgcagactgcacagcaacagcagggccagactgcacaaaatcagaaactacac
tacaatggctga
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integrated database retrieval system
