Aristolochia californica: 137949689
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Entry
137949689 CDS
T10486
Name
(GenBank) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137949689
09122 Translation
03013 Nucleocytoplasmic transport
137949689
03015 mRNA surveillance pathway
137949689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137949689
03041 Spliceosome [BR:
acak03041
]
137949689
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137949689
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137949689
Spliceosome [BR:
acak03041
]
Complex C
Other components
EJC/TREX
137949689
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137949689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
YihI
Motif
Other DBs
NCBI-GeneID:
137949689
NCBI-ProteinID:
XP_068651927
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVRDAETYEEELLDYEEEEDKGPDSVAAKGTGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPVAGQVAALV
LCHTRELAYQICHEFQRFSTYLPDIKIAVFYGGVNIKTHKELLKNECPHIVVGTPGRILA
LARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQAMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLNELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgagggatgccgaaacgtacgaggaggagcttcttgactatgaagaggag
gaggacaaagggcccgattctgtcgctgccaagggtactggggaatctgcgaaaaagggc
tatgttggaattcatagttcgggattcagagattttcttttaaagccagagcttctccga
gccattgtagattcaggatttgagcatccttcagaagtgcaacatgaatgcatcccacag
gctatcttggggatggatgttatctgtcaagcgaagtcaggaatgggtaaaactgctgta
tttgttctttcatcacttcaacaaattgagcctgttgctggtcaagttgcagctcttgtt
ttatgccatacaagggaattagcttaccagatttgtcatgagttccagaggtttagcacc
tatttgcctgatatcaaaattgctgttttctatggtggtgtgaatatcaaaacacacaag
gaattactcaagaatgagtgtccacatattgttgttgggactcctgggaggattctggca
ctagcaagagataaagaccttgcactgaaaaatgtgcggcattttatccttgatgaatgt
gacaaaatgctcgagtcactagacatgcgaagagatgtccaagaaattttcaagatgact
cctcatgataaacaagcaatgatgttttcagccactcttagcaaggagatccgcccagtt
tgtaagagatttatgcaagatcctatggaaatatatgtagatgacgaggccaagttaacc
ttgcatggtcttgtacagcactacattaaattgaatgagttggaaaagaatcgcaagttg
aatgatctgcttgatgcattggacttcaaccaagttgtcatttttgtgaaaagtgtcagt
agagcagctgagctgaataagctacttgtggaatgcaatttcccatctatttgtatccac
tcaggcatgacacaggaagaaaggttaacacggtacaagaacttcaaggaagggcataaa
aggattctggtggcgactgatttggttggaagaggaattgatattgagcgcgtcaacatt
gtgatcaactatgacatgccagactctgctgatacatacttacatagggttggtcgagca
gggcgttttggaactaaagggcttgccataacgtttgtatcttctgcctcagattcagat
gtcctcaaccaggtacaggagcgatttgaggtggatataaaggagttaccagagcagatt
gatacttctacttacatgccttcgtga
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integrated database retrieval system
