Aristolochia californica: 137949709
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Entry
137949709 CDS
T10486
Name
(GenBank) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137949709
09123 Folding, sorting and degradation
03018 RNA degradation
137949709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137949709
03041 Spliceosome [BR:
acak03041
]
137949709
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137949709
mRNA cycle factors
Stress granule specific factors
137949709
Spliceosome [BR:
acak03041
]
Complex C
Other components
Complex C specific factors
137949709
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_MARF1
RRM_RdRP1_2
SET_assoc
HobA
Motif
Other DBs
NCBI-GeneID:
137949709
NCBI-ProteinID:
XP_068651962
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MATPPSPPPQPIQQQQPSQQAQSQPQAGFNNPSLYVGDLDASVTEAQLYDLFSQVAPVVS
IRVCRDQIRRVSLGYAYVNYNNPQDAANAMEILNFTPLNGRPVRIMFSHRDPSIRKSGYA
NVFIKNLDTSIDNKALHDTFAAFGSVLSCKVATDNNGQSKGYGFVQFDQEEAAQHAIKQL
NGMLINDKQVYVGLFVRRQERERANGSPKFTNLYVKNLSESTTDEDLKKIFASYGPITSA
VVMRDANGNSRGFGFVNYQNPEDAASAVENLNGNIFSDDKVWYVGRAQRKSEREAELKVK
YEQERNGRLDKLQGANLYLKNLDDSIDDEKLKELFSDFGNITSCKVMLDPNGQSKGSGFV
AFSTPEEASRAVNEMNGKMVGRKPLYVAVAQRKEERKARLQAHFAQIRAPAAMTPAMPSS
LPGFHPGAPRLPPQQLYFGQGTPGLIPPQPAGYGFQQQLLPGIRPGVPPNFIMPYHLQRQ
GQAGQRMGVRRGGTPQQMQQQQLVQRNANQGGFRYMQNARNGVDPSMVPPQGMMGPMMPM
PLDVSGMPGAPMDAPRPGPIPITALASALASASPDHQRLMLGEQLFPLVERVEQDHAGKV
TGMLLEMDQTEVLHLIESPDALKKKVAEAMDVLRLAQVTSTDSADQLGSLSLND
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggctactcctccatctcctccgcctcagccgatccaacaacaacagccgtcgcagcaa
gcgcagtctcagccgcaggcggggtttaacaatccttctctttatgttggagatctcgac
gcttcggttacggaggcgcagctttatgatctcttcagccaggttgctcccgtcgtttcc
attagggtttgccgggatcagatcagaagagtctctctcggatacgcttatgtcaactat
aacaacccgcaggacgctgctaatgccatggagattttgaattttactcctcttaatggt
agaccagtaaggatcatgttttctcatcgagatcctagtatcagaaaaagtgggtatgct
aatgtgtttatcaagaacctggacacatccatagataacaaggccttgcatgacactttt
gcagcctttggcagtgttctatcttgcaaagtggccactgataacaatggccagtcaaaa
ggttatgggtttgtgcagtttgatcaggaagaggcagcacaacatgccattaaacaactc
aatggcatgttgataaatgacaaacaagtctatgttggcctttttgttcgtcgccaagaa
cgagaacgtgcaaatggatcaccaaagtttactaatctatatgtgaaaaacctatccgaa
tcaactactgatgaggaccttaagaaaatttttgctagttatggtcccattacaagtgca
gttgttatgcgagatgctaatggaaactcgcgaggctttggatttgtcaactaccagaac
cctgaagatgcagcttctgcagttgagaatctgaatggaaacattttcagtgatgataaa
gtttggtatgtcggtagggctcagcggaaatcagaaagagaggcagaactgaaagtaaaa
tatgagcaggaaagaaatggcagattagacaaattacaaggtgctaatttatatctgaaa
aatcttgatgattctattgatgatgagaaactcaaagagttgttttctgattttggaaat
attacttcctgtaaggtgatgcttgatccaaatggacagagtaaaggttctggctttgtg
gcgttttctactccagaggaagctagcagagctgtgaatgaaatgaacgggaaaatggtt
ggtaggaaacctttatatgttgctgttgcacaacggaaagaagaaagaaaagcaaggctg
caggctcatttcgctcagataagagctccagctgcaatgactcctgctatgccctcaagt
ttgcctggattccatccgggtgcacctaggctaccacctcagcagttgtattttggtcaa
gggacacctggtctcattcctcctcaacctgctggatatggcttccagcagcaacttcta
ccaggcattcgacctggtgtacccccaaactttataatgccgtatcatctccagaggcaa
ggacaagctggacagcgtatgggtgtaagacgtggtggaacccctcagcagatgcagcaa
cagcagttggttcagcgaaatgcaaatcaaggtggattcagatacatgcaaaatgctcgt
aacggggttgatccatccatggtgcctcctcagggtatgatgggtcccatgatgccaatg
ccccttgatgtttctggaatgccaggagctccaatggacgcacccaggcctgggcctatt
ccaataacagcacttgcctccgctctggcttctgcaagtcctgaccatcaacgactgatg
ttgggagagcaactgtttcctctggtggagcgtgtagagcaagatcatgctgggaaagtt
actggaatgctgttggagatggaccaaacggaagttcttcacctaatagaatctcctgat
gctctgaagaagaaagttgcagaagccatggacgttctccggttagctcaggtcacaagc
accgactctgctgaccagcttggttcgttgtccctgaacgactga
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