Aristolochia californica: 137949735
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Entry
137949735 CDS
T10486
Name
(GenBank) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137949735
09122 Translation
03013 Nucleocytoplasmic transport
137949735
03015 mRNA surveillance pathway
137949735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137949735
03041 Spliceosome [BR:
acak03041
]
137949735
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137949735
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137949735
Spliceosome [BR:
acak03041
]
Complex C
Other components
EJC/TREX
137949735
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137949735
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
137949735
NCBI-ProteinID:
XP_068651999
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MGDTKDGEAYEEELLDYEEEEEKGPDSSVASKVTGESAKKGYVGIHSSGFRDFLLKPELL
RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAL
VLCHTRELAYQICHEFERFTTYLPDIKIAVFYGGVHIKNHKDLLKNECPHIVVGTPGRIL
ALARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKELEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLMECNFPSICIHSGMKQEERLTQYKGFKEGNKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSASTDVDVLNQCLHDVYRKRRLLLFS
GLFCQWRRWEKILKKTGS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacacgaaggacggtgaagcttacgaggaggagcttctcgactacgaagaggaa
gaggagaagggaccggattcttcggttgcctctaaagtcactggagaatcggcgaagaaa
ggttatgttggaattcacagttcgggatttcgagatttccttttgaagccagagcttctt
cgtgctattgtagattcggggtttgagcatccctcagaagtgcaacatgaatgcatccct
caagctatattggggatggatgtcatctgtcaagcgaagtcagggatgggtaaaactgca
gtctttgtactttccacattgcagcagattgagcctgttgctggccaagtggctgctctt
gttctatgtcacacgagggagttagcttaccagatctgtcatgaattcgaaaggttcacc
acatacttgcctgatattaaaattgcagtcttctatggtggagtccatattaaaaatcat
aaggatttgcttaaaaatgagtgcccacatattgtggtgggcacacctggcaggatacta
gcactggcaagagataaagatctctcgttgaggaatgtgaggcattttattcttgatgaa
tgtgataaaatgcttgaatcgcttgacatgcggcgagatgtgcaggaaattttcaagatg
acccctcacgataaacaagtcatgatgttttctgcaacacttagcaaggagatacgtcct
gtttgcaagaaatttatgcaagacccaatggaaatttatgtcgatgatgaagccaagttg
accctgcatggtcttgtgcagcactacattaagctgaaggaattggagaaaaatcgaaaa
ttgaacgatctgcttgatgctttggacttcaaccaagttgtaatctttgtcaaaagtgtg
agcagggcagctgagctgaacaagttgcttatggaatgtaatttcccatctatatgcata
cattctggaatgaaacaggaggaaaggttaacacagtacaagggcttcaaagagggcaac
aaaaggatcctagtggctactgatctggttggcaggggaatagatattgaacgtgtcaac
attgtgatcaactatgacatgccagattcagcagatacttacttgcacagggttggcaga
gccggacgatttggtaccaagggtcttgctatcacttttgtatcagcttctactgatgtt
gatgttcttaatcagtgccttcatgatgtatacagaaaacgtcgcctactactcttctcc
ggtctcttttgtcagtggaggcggtgggagaagattctgaagaagacgggtagttag
DBGET
integrated database retrieval system
