Aristolochia californica: 137950248
Help
Entry
137950248 CDS
T10486
Name
(GenBank) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137950248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137950248
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
137950248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_16
TPR_17
TPR_14
TPR_12
TPR_9
TPR_8
TPR_CcmH_CycH
TPR_19
TPR_7
ARM_TT21_C
BTAD
Motif
Other DBs
NCBI-GeneID:
137950248
NCBI-ProteinID:
XP_068652735
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MEEERFRQLKDALDSDPDNPAHHFNLGLLLWEKGEKSNQLKEKAVEHFVISARLNPNNGV
AFRLLGHYYSRVSVDSQRAARCYQRAVTLNPDDYEAGEGLCDLLDGEGKEILEVSVCREA
SKKSPRAFWAFRRLGYMQVHQKKWSEAVQSLQHAIRGYPSCSDLWEALGLAYQRLGMFTA
ALKSYGRAIELENSSVFALVESGNILLMLGSFKKGAEQFQNALKIVPNNVAAQYGLASAL
LGLSQDSIKSGAYFWAASLLEEASEIAKASTCLAGNNSSVWKLLGDIKLAYAKSFPWVSE
GQNREIDESSFKTSILEWKKERVKAAVNANRSYQKALHLTPWQANIYTDVAIALDLISSE
DEKNTSQNSDLEAWQLPEKMSLGGLMLEAGNSEVWIVLGCLSYHKSLKQHALIRGLQLDV
SLAAAWAFLGKLYRQEGERFLARQAFDLARSIDPSLALPWAGMSIDTYTGGSINEAYESC
LRAVQTLPVPEFQLGLGNLSLSSGQLLAPQVFCVLRQAVHLAPHYPESHNLSGLVYEARG
DYQSAIAAYRQAQYACRCFVGRDQMSGVAHASFNLARSLCEVGYALEAANECQVLQKEGL
LDDKGLQVYAVALWKLGRTEQSLSMARSLAKSVSTMNQTSGLAATGLILKLVYCISGQKA
AASSILKTPRNLMHSVKISYILSVLVTLDQSGQLRSFLPSDLSFISSHEEITSLHSLIAI
VKLVVDGSQNHLGIQSGVDYLRKTLHMYPDSISIRNQLGLLLLQSEVWNSSHSATRCIVL
EHPRPLIPKVSTSGNEVIGSAAVACHVSSATNLKSSFATCADQRTQGTGILQQLQKWLRE
EPWNHKALYLLVLSFLQKAREEKFPPHLCVIMKRLVVTALSNEVYSRKDQHYQYQKFQLL
LSASEICLQGGDHLDCISYATDASQLPLPSCDLFFAHLQLCRAYALQEDFSKLKEEYIEC
VQLGTDKQCGWISLKYIECRYKVQNNENPINLRFERCLQDEGTTSKKWMAIYDLVCAQSF
LWDQNFLQAERVLAHACSLGVAESCLLLLHGLICLELAKQRSGSEFLSLAVSSLTKAKEF
SLVCLPIVSVLLAQAEASLGARTKWEDNLRLEWFSWPAEMRPAELYFQMHLLAKQSKVAS
GSHSNVEALQSPQRWILRAIHINPSCARYWKVLERVKE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaacgattccgacagttgaaagacgcattagattctgatccggataatcct
gcacatcatttcaatcttgggttgttgttgtgggaaaaaggtgaaaagtccaaccagctg
aaagaaaaggcggttgagcattttgtaatatcggcgaggttgaaccctaacaatggcgtc
gcatttcgcctcctggggcattactatagtagagtttcagttgactcgcagagagctgcc
aggtgttatcagagggccgtgactttaaatccggatgattacgaagctggggaagggctt
tgtgatttgctagacggggaaggaaaagagattttggaggtttctgtttgtcgggaagct
tctaagaagtctcccagagctttttgggcatttcgaagactaggctatatgcaggtacat
cagaaaaaatggtcagaagcagttcagagccttcaacatgccattcggggttatccaagt
tgctcagatttatgggaggcacttggtcttgcatatcagcggctgggcatgtttaccgct
gctttaaagtcgtatggacgggcaatcgaactggaaaattcaagcgtctttgcattagtg
gaaagcgggaacattctattgatgcttggttctttcaaaaaaggagctgagcaatttcag
aatgccctgaagattgtacctaataatgtagctgcccagtatgggcttgcttctgccctt
cttggtttatctcaggattccatcaagtctggtgcatatttttgggcagcttctctattg
gaggaggcatctgagattgcaaaagcaagtacctgcttggctggaaataattcttctgtc
tggaaattgctgggcgacatcaagcttgcatatgcaaaatcttttccatgggttagtgag
ggacagaacagagaaattgatgagagctctttcaaaacttccattttggaatggaagaag
gagcgtgtcaaggctgctgtcaatgctaatcgctcttaccagaaagctttacatctgacc
ccttggcaagccaatatctacaccgatgttgcgattgctttagatcttatttcctctgaa
gatgagaaaaatacatctcaaaactctgatctcgaagcttggcagttacctgagaagatg
tccctgggtggtctgatgcttgaagctggcaatagtgaagtttggattgttctgggctgc
ttatcctatcataagtcattaaagcagcatgctttgataaggggattacaactggatgtg
tctcttgctgcggcgtgggcatttcttggaaagctttacagacaagaaggcgaaaggttt
cttgcgaggcaagcctttgatcttgctcgaagtattgatccttcgcttgcattgccgtgg
gctggcatgtcgatcgatacttatacaggcggttcaattaatgaggcttatgagagctgc
ctgcgagctgtacagaccttgcctgtccctgaatttcaacttggtctaggaaatctctct
ctttcttcaggccagctacttgctccacaggtgttttgtgtcttaaggcaagctgttcat
ctagcacctcattatccagagtcgcataacctaagtggcctggtgtatgaagcacggggg
gattatcaatctgcaattgccgcttatagacaggcacaatatgcctgcagatgttttgta
ggaagagatcaaatgtctggtgttgctcatgcatcattcaatctggcaagatctctttgt
gaggtagggtatgcacttgaagcagcgaatgagtgtcaagtattgcagaaagaaggtctg
ttggatgacaagggtctgcaagtatatgctgtagcattatggaaacttggtagaacagaa
caatctctatccatggcaagaagcttagctaaaagtgtctctacaatgaatcagacatct
gggcttgctgcaactgggttgatattgaagttggtgtattgcatttctggccagaaggca
gcagcttcatcaattttgaaaactcctcgtaatttgatgcatagtgtgaagatcagctat
attctttctgtacttgttactttggatcagagtggccaacttcggtcgtttcttcctagt
gatcttagtttcatttcatctcatgaagagattacttccctgcattctttgattgccatt
gtaaaactggtagtggatggatcacaaaaccatctgggaattcaaagtggcgtggattac
ttaagaaaaactttgcatatgtatcccgacagtatttcaattcggaaccaacttggttta
ctcctcttacagagtgaggtatggaattcatctcactctgcaactagatgcattgttcta
gagcatcctaggcctctgattcccaaagtttccacatcaggcaatgaggttattggctct
gcagcagttgcatgtcatgttagcagcgccacaaatttgaaatcttcctttgcaacatgt
gcagatcagcggacacaaggaacaggaatattacagcagttgcagaaatggctgcgcgag
gagccttggaatcacaaggcactgtacttgcttgtacttagttttttacaaaaggctcga
gaagagaaatttcctccacatttgtgtgtcattatgaagcgattagttgtcacagctttg
tctaatgaagtctattcaaggaaagatcaacattatcagtatcagaaattccagcttctg
ctttctgcatctgaaatttgtttgcaaggtggagaccacctggattgcataagttatgct
acagacgcttcccaactaccacttccttcttgtgaccttttctttgcacacttgcaatta
tgtcgtgcatatgcattacaggaggatttttcaaagctgaaagaggaatatattgaatgt
gtccagcttgggactgataaacaatgtggttggatatctctgaagtatattgaatgtaga
tacaaagttcagaacaatgagaaccctataaatctgcgttttgaaagatgtttgcaagat
gaaggcacgacgagtaaaaaatggatggctatctatgatttagtgtgtgcccagagcttt
ctgtgggatcagaactttcttcaagcagaacgggttctggcacatgcttgttcacttggt
gttgctgagagttgtcttcttctccttcatgggctcatctgtttggaacttgcaaagcaa
agatcaggttctgagttcttatcactcgcagtaagcagcctcacaaaagctaaggaattt
tctctcgtctgtttacctattgtatcagtgctgctggctcaggcagaagcgagtctaggt
gccagaactaaatgggaagataatctccgccttgaatggttttcttggccagcagagatg
aggcctgctgaattatacttccaaatgcatttgcttgcaaaacagtcaaaagttgcatct
ggctcacattctaatgttgaagcactacaaagtccacagaggtggatccttcgtgcaatt
catataaatccctcttgtgcaaggtactggaaggttttggagagagtgaaggaatga
DBGET
integrated database retrieval system
