Aristolochia californica: 137950927
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Entry
137950927 CDS
T10486
Name
(GenBank) uncharacterized protein isoform X1
KO
K19026
spatacsin
Organism
acak Aristolochia californica
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acak03400
]
137950927
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
137950927
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
137950927
NCBI-ProteinID:
XP_068653692
LinkDB
All DBs
Position
Unknown
AA seq
3197 aa
AA seq
DB search
MVLPNKGDSGVGPAVLQLRKWAPAYLHSDISEYREALLSPTRELLLLLSHQSEALLLPLN
AGEVLSSTKVERDESDNFQLEESRRLNSLDSSPSTSAPSIFFSHGPTFIAGVKSLAWGYV
GDKCNLHKDSSPKELLILSTDHGVTVHCFHSLDYRIQVANSAQEGSGLLRGRWVEWGPTD
ASVHRQADEQSSGRKNIYGLSYRSSCTSKKWLSTFLTEVEMIETNGDFVTKFPPKSSFPG
DAEVVSFCISFTDSIFVDFLSRANLDEKENQIQQTRIDPLKINSKSEETVPLLVCSRVFS
SLSHHMVGFVLTLTEPVLDNTSKMRTQYSGKTIVVIAILYWWGFQWVCSVILENLGPKIE
WMDFNFSDKLLVCLGSTGLVSLWDATTGLFVAQLCVSHCCGLSLKKQYVVEQSKLGVVAE
FTPRSENFGHSNRIFKRILVTFNSSMLGIIDEYGVVYVICADDYVSERHYSFSKLVPHFL
HCGLGILGGWEAAGSEIGDQRIFSDISNYNGLTENGSTCRVHRDDLKLWKKQKWLVQGKA
SQDSKLSSFSNPSQGKICNISMSAGSSTPIRRIFLPTNACEEEGSICFSPLGVTRLLRGC
KEKDKKGLRIVHTSLHIGSVICDDRGLDAGLQPRSYWLLEEEHAYAGKAVGCSFQGCLYL
VTQDGLFVVLPSVSVSSDGIPVESIDSWLPGVSIHAGHLRKKSSTIEESKNLSQPWKIEV
LDKVLLLEGPAEADRLCLLNDWNLKVVRMRRLQLAMHYMRLEQIEESLESLVDVNLAEEG
VFRLLFAAVYQIFSGVGSDNEVALASRILSLATRFATKMVRKYGMLEQKDKIMFQAMGGS
RMLYLESMPSKGKNGIGNSGRLQEMAHFMEIIRNLQCRLSAKCRRPQGVVDDNTDGFGLL
DTNALQDDSSFSEPSVETNEDASEAQSQRNVAFSSSDLEFPTNDKFALSTVDSSVAPRPP
NLGSSHIVVTHESRGGIIQKKKVLPLENPKDMISRWKVGNLDLKTVVKDALQSDRLPLAV
LQLHLQRSKDLASEKDYHDSFNEVRDVGRAIAYDLFLKGETALAVTTLQRLGEDIEVSLR
QLLFGTVRRSLRIQIAQEMKTWGYLGLNEWNALERLSLIERVYPSSTFWATYLSRQKQTS
KVSSRPAVLERNKLQFTCSWACDAVIECGEIDGVLLGSWTNLDESHSLPALEGDNVDAGY
WAAAAIWSDAWDQKTVDRIVLDQPFLMGVHVLWESQLEYYVCHNDWDEILKLLNMVPATL
LSDGSLQISLDELVSSTAAGGHKKISDHVDYFCPMEELDSVCINVPNVKLFNLSIDKMCS
LWLRTLIEQELAKNFIFMKDYWEGTEEIVALLARSGFITGTYGLTDCSKSSAKTTDPHSS
KLSVSLCKETMQALYRLIIHHCSRYNLPNLLDLYLDHHEMVLDDSLGSLLDAAGDCEWAR
WLLLSRIKGREYDASFANARSIICHNIVPGSKLSVPEIEDIICTVDDIAERGGEMAALAT
LIYAPVPIQKCLCSGSVNRHCSSSAQCTFENLRPCLQHFPTLWRALVSACFGHDPSESSL
GFTAKNAFGKSMFSGYLNWRESVFFSSGSDTSLVQMLPCWFSKSIRRLVQIFVQGPLGWQ
SLTGGGESSARRDIYFDFAGDENTHLSAISWEAAIQKNIEKEVYASSLEATGFGIEHHLH
RGRALAAFSNILGARAQKLKTTYSLQTPHGPIIQGQASIQSDVQKLLAPLTQDEESLLSS
VMPLAILHFEEPMLVASCAFLLELCGLSATVVSVDVAALSRISAYYKSIENMEQYNHVTQ
RSSAFHPMPHEGDIAALLARALADDYLHPVNLQTIGKKDTSPRVEVGQRPSQALTSVLQH
LEKASLQSMPEGRTCGSWLFSGDGDGTDLRSQQKASSQHWSLVTVFCQIHQLSLSTKYLS
VLAQDNDWVGFLTEAQCGGFPFDVVVKVASEEFSDPRLKMHILNVLRNMQSARRKAGSAS
SSLSMGSNVISLAGENYIMSPTELFGLLAECEKQKNPGETLLMRARDLRWSLLAMVASCF
ADASPLACLTVWLEITAARETSSIKVNDIFSKIAQNAGAAVKATNEVPASDRTIAFRYNR
RNPKRRCLMEPMSANPSGAVPFKISATSSVIDISAVQEITDEECRNDNQGQLKIINDPDE
TLAYLSKMVAVLCEQHLFLPLLRAFEMFLPSCSLLPFIRFLQAFSQMRLTDAANHLNHFS
GIFRDERPHMHTNLHRDCQIGSAWIGSTAVKAAEAILSTCPSPYEKRCFLHLLSSADFGD
GGSAAAHFRQFYWKISIAEPSLRKDDGLYLGKETLDDDASLLAALEKNGDWEQARSWARQ
LEASGGQWKNVVHHVTETQAEAMVAEWKEFLWDVPEERAALWGHCQTLFIRHHFPSLQAG
LFFLRHAETVEKDIPARELHEMLLLALQWLSGSINQINPVYPLHLLREIETRVWLLAVES
EAQAKTEGDFTVPAHMPHVIDGNNANIIEQTASVIGKMDNHLNLMRVQATERGDSSNGTH
LRHSLAPDANSPSTTGGSSSKMKRRAKGYLTSRRSVPDTERTSEQDSMSSSPLSFRNNDE
LLRNQEENVKVEASVSGWEERVGPAEIERAVLSLLEFGQVTAAKQLHYKLSPTHVPSEFL
LVDAALKLASTLSPRKIGEVSLSMFDLELCSVLESHGILNEHQMREPLQVLEAIAVKCTE
GCGRGLCKRIIAVVKAANMLGLSFSEAFEKRPIELLQLLSLKAQESFEEAKILVETNFMP
PASIAQILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFSDFLKWAELCPSEPEIGHAL
MRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVALAATRVESYVSEGDFSCLAR
LVTGVSNFHSLNFILGILIENGQLELLLHKYSAADRTPGSAEEVRGFRMAVLASLKHFNP
HDLDALAMVYNHFDMKHEMASLLELRATQSTQQWFLHYDRDQNEDLLDSMRYFIEAAEVH
STIDAGNKTHRTCAQASLLSLQIRIPDFDWLNLSETNARRVLVEQSRFQEALIVAEAYGL
NQPSEWALVLWNQMLKPDLIEQFIAEFVAVLPLQPSMLAELARFYRAEVAARGDQSHFSV
WLSPGGLPAEWIRHLGKSFRSLLKRTRDLRLRVQLATIATGFGDVIDACVNTLDRVPETA
GPLVLRRGHGGTYLPLM
NT seq
9594 nt
NT seq
+upstream
nt +downstream
nt
atggttctacctaacaagggcgattctggagtcggacctgctgtgttacagctccgaaag
tgggccccggcgtatctgcattctgacatttcagaatatcgtgaagcattgctctctcct
acgagagagctcttgctactgctttctcatcaatctgaagccttgctgctccctttaaat
gctggagaagtgttgtcttctaccaaggtagaaagagatgaatctgataactttcagtta
gaagagtcccgaagattgaattcattagatagcagcccgtccacttctgcacccagtatt
tttttttcacatggacctactttcattgctggtgtaaaatccttggcatggggctatgtt
ggggataagtgtaatctgcacaaggattcttctcctaaggaacttctcattttatctact
gatcatggtgttacagttcattgtttccactccttggactatagaatacaggtggccaac
tcagcacaagaaggaagtggtttattgcgaggtaggtgggtggaatggggccctactgat
gcttctgttcatagacaggcagatgagcagagtagtggaagaaagaatatatatgggctt
tcttatcgcagcagttgcacttcaaagaaatggttgagtacctttcttactgaagttgaa
atgattgaaaccaatggagactttgttaccaagttccccccaaagtcatcttttcctggt
gatgcagaggttgtttcattctgcatctcatttactgattcaatatttgtggacttcctt
tctcgagctaatctcgatgagaaggaaaatcagattcagcagactagaattgatccacta
aagataaactctaaatctgaggaaacagtcccactgctagtgtgttccagagtgttctct
agcctgtcccaccatatggttggatttgttctcacattgacagaacctgtactggacaat
acaagtaaaatgaggacacaatactctggaaagactatagttgttattgctattttatat
tggtgggggtttcagtgggtttgctcagtgatacttgagaatttaggccctaaaattgaa
tggatggactttaacttctcggacaaattacttgtttgtcttggcagtacagggttagtc
tctctctgggatgcaacaactgggctgtttgttgctcagctttgtgtttcacactgttgt
gggctaagtttgaagaaacagtatgtagtggagcagtcaaagttgggtgtagttgctgag
ttcacccctaggagtgaaaattttggtcactctaacagaatattcaagcggatattggtc
acttttaattcctcaatgttgggtataattgatgaatatggagtagtttatgtaatttgt
gcagatgactatgtttcagaaaggcattattcattcagtaagctggttccacattttctt
cactgtgggcttggaatattgggtggctgggaagctgcaggttctgaaattggtgatcag
aggatattttctgatatatcaaattacaatgggttgacagaaaatggcagcacatgcaga
gttcatagagacgatcttaagctctggaaaaagcagaagtggcttgtccagggcaaagca
agtcaggattctaaattatctagtttttccaatccatcacagggtaaaatttgcaatatt
tctatgtctgcaggatcatcaactcccatccgcagaatatttcttcctaccaatgcatgt
gaagaagaagggtccatatgtttttctccactaggagtcactcgactgcttcgtgggtgc
aaagaaaaggacaagaaggggttaagaattgttcatacttccttacatattgggtctgta
atttgtgatgacagaggcttagatgctggcctgcagccaagaagctactggctcctggag
gaggagcatgcttatgctggcaaagctgtcggttgctcattccaggggtgtctatatttg
gtgacccaagatgggctttttgttgttcttccttctgtctcagtctcgtcagatggaata
ccagtagaatctattgacagttggctgcctggtgtcagtatacatgctggacatctaagg
aaaaagtcatccactatagaggagtcaaaaaatttatcccaaccttggaagatagaggta
ttggacaaagtattactgcttgaaggccctgctgaggcagatcgtttgtgcttactaaat
gattggaacttgaaagttgtgcggatgcgtcgtcttcagttggcaatgcactacatgaga
ttggaacagatagaagagtccttagaatcacttgtggatgtgaatttagctgaagaaggt
gtcttcaggttactgtttgctgctgtctatcagatattttctggagtgggtagtgataat
gaggttgcacttgcttccagaatcctgtctttagctactcgctttgcaaccaaaatggtt
cggaagtatggcatgctagagcagaaagataaaatcatgtttcaggccatgggaggttca
agaatgctttatttagaatccatgccatctaaaggaaagaatggaattggtaattctgga
aggcttcaagagatggctcacttcatggaaatcatcaggaatcttcagtgtcgccttagt
gctaagtgtagaagacctcaaggagtggtagatgataacacggatggatttggtttgtta
gatacaaatgctctgcaagatgactcttctttttctgaacctagtgtggagactaatgaa
gatgcttcggaagctcagagccagagaaacgtggccttctcttcatctgacttagaattt
cccaccaatgacaagtttgctttgtcaactgttgactcttcagtggcacctaggcctccc
aacttgggaagtagccatatagttgttacccatgagtctaggggtggtataatccagaaa
aagaaagtacttcccttggaaaatcctaaggatatgatttcacgttggaaggttggtaat
ttagatctaaaaactgtagtgaaagatgccttgcagtcagatcggctccctttggcagtt
cttcagctacaccttcaacgatcaaaagatttggcctctgagaaagattatcatgattca
ttcaatgaagttcgtgatgttggaagagcaattgcttatgatttgtttttaaagggtgaa
actgcgctagctgttaccacattgcaaagacttggagaggatattgaagttagcctcaga
cagttgttatttggtactgtaaggagatctcttcgaattcaaattgcccaagagatgaaa
acatggggttacctggggctcaatgagtggaatgcactggaaagactctcccttatagag
agggtgtatcccagcagcaccttctgggccacatatctcagcaggcaaaagcaaacaagt
aaagtgtcatctcgtcctgcagtgcttgaaagaaataaactacagtttacttgctcatgg
gcatgtgatgctgtaatagaatgtggtgagatcgatggagttctgttgggttcttggaca
aatcttgatgagagccattctcttccagcacttgagggagataatgttgatgctgggtat
tgggctgctgctgctatctggtctgatgcatgggaccagaaaactgttgatcgtattgtg
cttgatcaaccttttcttatgggagttcatgtactatgggaatcacaacttgaatactac
gtatgccataatgattgggatgaaatcttgaaactcctgaacatggttccagcaacttta
ttgtctgatggaagcctccaaattagtttggatgaattagtctcttctactgctgctgga
ggccacaaaaaaatttctgatcacgtggactatttctgcccaatggaagagttagattct
gtgtgtataaatgtcccgaatgttaagcttttcaatttatctattgacaaaatgtgctct
ttgtggttaagaacacttatagagcaggagcttgccaagaactttattttcatgaaagat
tactgggaaggaactgaagaaattgtagcacttttggcccgttcaggcttcatcactgga
acatatggtttaacagattgttctaaatcttctgccaaaacaacagatccacattcctca
aaattgagtgtatcactatgcaaagagaccatgcaagctttgtataggctcataatacat
cactgctcacgatataacttgcccaaccttcttgacctatacctagaccatcatgaaatg
gtcctagatgattcccttggttcactgctggacgctgctggagactgcgaatgggcaaga
tggttactcttgtcacgaataaaaggacgagagtatgatgcttcctttgctaatgctcgc
tcaattatatgtcataacatagttcctggtagcaaactcagtgttccagagattgaggac
ataatttgtactgttgatgacattgctgaaagaggaggagaaatggctgcattggcaacc
ctaatttatgctccagttcctattcagaaatgcctctgcagtggaagtgtcaataggcat
tgcagctcttcggcacaatgcacttttgagaatttaaggccctgtctccaacattttcca
acactatggcgtgctttggtttctgcatgctttggacatgacccttctgaaagttctttg
ggttttactgccaaaaatgcatttggtaagtctatgttttcaggctatttgaattggcgg
gagagtgtatttttttcttctggcagcgacacctcattggtccaaatgcttccatgttgg
ttttcaaagtctattcggagattagttcaaatttttgtccagggcccactgggatggcaa
tctctaacaggtggtggagaatcatctgcccgcagagacatctattttgactttgctggt
gatgaaaatactcatctcagtgccatatcttgggaagcagctattcagaagaacatcgag
aaagaagtttatgcttcctctctagaggctactggatttgggattgagcaccacttgcat
cgtggccgtgcactggcagcgttcagcaatatccttggggctagagctcaaaaactaaaa
acaacatattcacttcagactccacatggacctatcatccagggacaagctagtatccaa
tctgatgtgcaaaaattgcttgcaccattgactcaggatgaagaatctctcctgtcatca
gtcatgccacttgccatcttgcattttgaggagcctatgttggtcgcttcttgtgctttt
ctcttggagctttgtggcttatctgcaactgtggtttctgttgatgttgctgccttgagc
cgaatttcagcttactacaaatctattgagaatatggagcagtacaatcatgttacacaa
aggagttcggcttttcatcccatgccccatgaaggtgacattgctgctttgcttgctcgg
gcattggcagatgattatctccatcctgttaatcttcaaactattgggaagaaggatact
tctcctagagttgaagttggtcagcgaccgtcccaggcccttacttcagttctacaacat
ttggagaaagctagtctgcaatccatgcctgaaggaagaacttgtggatcttggcttttt
agtggtgatggggatggaactgatttacgatctcaacaaaaggcgtctagccaacattgg
agtcttgttacagtcttctgtcagatccaccagctatcactaagcacaaaatatctttca
gttcttgcgcaagataatgattgggttgggtttctaacagaagctcagtgtggtggcttt
ccatttgatgttgttgtgaaagtagcatcagaagaatttagtgatccacgtctcaagatg
cacatattaaatgttctaagaaacatgcagtcagcaaggagaaaagctggtagtgcgtca
agttcgctatctatgggaagtaatgtcatttctttggctggcgaaaactacattatgtct
cctacagaactatttggacttcttgctgagtgtgagaagcagaaaaatcctggtgagacc
cttctaatgagagccagagatctgcgctggtcacttttggcaatggttgcatcttgcttt
gctgatgcatctcctctggcatgcctcacagtgtggctggagataactgcagcaagagag
acctcatccatcaaggtcaatgacattttctccaaaattgcacaaaatgctggagctgct
gtcaaagcaacaaatgaagtgcctgccagtgatagaactattgcatttcgatacaatcga
aggaacccaaagcggagatgtctcatggagcctatgtcagcaaatccttcaggtgctgtc
ccattcaagatttccgctacttccagtgtcattgacatttctgctgttcaagaaatcact
gatgaggagtgcagaaacgacaatcaggggcaactaaaaattataaatgatcctgatgag
acacttgcctatctgtccaaaatggttgcagtgctctgtgagcaacatctgtttcttcct
ttgctcagagcatttgaaatgtttcttccatcatgttctctgttaccgttcatccgtttt
cttcaggcattttctcaaatgcggctgacagatgctgccaatcacttaaaccatttctct
ggcatattcagagatgagcggcctcacatgcatacaaacctacacagagactgccagata
ggttctgcatggataggctctactgcagtgaaagctgcagaggcaatcctgtctacttgt
ccatctccatatgaaaaaagatgtttcctacatcttctttcttctgctgattttggggat
gggggttctgctgctgctcattttcggcaattctattggaagattagtatagctgaacct
tctcttcggaaagatgatggtttgtatctgggtaaggaaactctagatgatgatgcttca
cttttggcagcactagaaaagaatggagattgggagcaggcacgtagttgggcaagacag
ttggaagcaagtggtggacagtggaaaaatgttgttcaccatgtgactgagacacaggct
gaagccatggtggcagagtggaaggagtttttgtgggatgtgccagaggaaagagctgct
ttgtggggccattgtcagacactgttcatcagacatcacttcccttcactgcaggctgga
ctctttttcctgagacatgcagaaactgtagaaaaagatattcctgcaagagagctgcac
gaaatgctcctactagcccttcagtggcttagcggaagtataaatcaaatcaatccagtt
tatcccttgcatcttctgagggagattgagaccagagtgtggctcttagcagtagaatca
gaggctcaggcaaagactgaaggagactttactgtacctgcacatatgccacatgtaata
gatggaaataatgctaacattatagaacaaactgcaagtgtcattggaaaaatggataac
catttaaatctgatgagggtgcaagctacagaaagaggtgattcaagtaatgggacccat
cttcgccactcactagccccggatgctaactccccgtcaacaacagggggtagcagttca
aagatgaaacgaagagccaaaggatatctgacttcaaggaggtcagtaccagatacagaa
agaactagtgagcaagactctatgtcttcatctcccctgagtttcagaaacaatgatgaa
cttctcaggaatcaagaggaaaatgttaaagttgaagcgtcagtttctggatgggaggaa
agagtgggtcctgctgaaatagagagagctgtcctttctcttttggaatttggacaagta
acggctgccaagcagcttcattataaactctctccaactcatgtaccatcagagtttcta
cttgttgatgctgctttaaagcttgcttctactctgtctccacgtaagattggagaagta
tctctttcgatgtttgatctggaactctgttctgtccttgagtcgcacggtatactgaat
gaacatcagatgcgagaaccattacaggttttagaggctattgcagttaagtgcactgaa
ggttgtgggcgtggactgtgcaagagaattatagctgttgtaaaagcagcaaatatgctg
ggtctttctttttctgaggcattcgagaaaaggcccattgaacttctacagttactctct
ctaaaagcccaagagtcatttgaggaagcaaaaatcctcgtggagacaaatttcatgcct
ccagctagcattgcacaaattcttgccgagtcctttctcaagggtctattagctgcacat
cgtggagggtatatggattcacaaaaggaggaaggcccagctccgctactttggaggttc
tctgacttcctaaaatgggcagagctatgcccatcagaaccagaaattgggcatgctctg
atgcgtttagttattactggacaagaaataccacatgcttgtgaggttgagcttcttatt
ctgtcacaccacttctacaagtcctcagcatgccttgatggagtagatgttcttgtagcc
cttgcagcaactagggtagaatcttatgtttctgaaggggatttttcttgtttagctcgt
ttggttactggagttagcaatttccattccctgaatttcattctaggcattcttatagag
aatgggcaattggaacttctgcttcacaagtattcagcagcggaccggaccccaggtagt
gctgaggaggtcagagggtttcgtatggctgtgcttgcgtcactcaagcattttaatcct
catgatcttgatgcactagcaatggtctataatcattttgacatgaaacatgagatggct
tctctcttagaattgcgagccactcaatccacgcagcagtggttcttgcattatgacagg
gatcagaacgaggacctcttggactctatgcgatacttcattgaagctgcagaggttcac
tccaccattgatgcaggcaacaaaacacaccggacttgtgcccaagcatctctcctgtcc
ctccagatccgcattcctgactttgactggcttaacctctctgaaacaaatgcacgccga
gtcctagtggagcaatcgcgattccaagaagccttgattgtagctgaagcctacggattg
aaccagccaagcgagtgggctctcgtattatggaatcaaatgcttaagcctgatctgatt
gagcaatttattgcagagtttgtggctgttcttcctctacagccttcaatgcttgccgaa
ttggcaaggttttatagggctgaggtggcagctagaggtgaccaatcccacttctctgta
tggctatcacctgggggattgccagctgagtggattagacatcttgggaagtcattcagg
agcttgttgaagagaacgagggacttgaggttgagagtgcagttggcaacaattgcaaca
ggatttggcgatgtaattgatgcgtgcgtaaatactttagatagggtcccagagacggca
ggtccactagtgctacggagggggcatggtgggacctacctacctctcatgtga
DBGET
integrated database retrieval system
