Aristolochia californica: 137952182
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Entry
137952182 CDS
T10486
Name
(GenBank) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
acak Aristolochia californica
Pathway
acak03440
Homologous recombination
acak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137952182
03450 Non-homologous end-joining
137952182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acak03032
]
137952182
03400 DNA repair and recombination proteins [BR:
acak03400
]
137952182
DNA replication proteins [BR:
acak03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
137952182
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
137952182
BRCA1-C complex
137952182
NHEJ (non-homologous end-joining)
MRX complex
137952182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
SbcC_Walker_B
AAA_29
AAA_15
DASH_Hsk3
Rad50_zn_hook
ABC_tran
Motif
Other DBs
NCBI-GeneID:
137952182
NCBI-ProteinID:
XP_068655356
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFYKPLTLIVGPNGAGKTTIIEGLKYACTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREVPVLMGVSKAVLENVIFVHQDDANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAFKLRESIAQDQERTESFIS
QMQELEQNIQNVERKISSTETTLKELQAVQDEISIKDTKRSMLFKLQQTQYANLAEENED
TDEDLKEWQSKFEEKIAQLESKIRKLERHMNDVETESTLTSQQINASTREIAKLQAEAEG
YEAVKHERDTAIQKFFSEHNLGPLPNLPLSNEVAFNLINQAKMRLMDLETDLLDKKKASE
TELKSLWDRYVGASNQCSESEGQRQAKIAMKVSILKQIEEKENERDEAEIELSNHNLSRI
DEKEKNTHMEVERKSTQLKERNYEFNINQKQLEISSLDQRIKGLYRDKDVMASDSEDRVK
LDVKRDELEGLKKKHKKIVDEHKDKIKSVLKGRFPSDKDIKKEITHALSLVRQEYDDLNS
KSHEAEREMKLVQMKREDLNNNLNKFHKDMEAKRRFIDSKLQALAQISFEVESFPKVLLD
AMEKRDAQKSNYDAAKGMKDLFEPFESSARLRHACPCCDRGFSLVEEDEFVEKQRTKSKN
ADEIVNKLAADFSKADLHFQQLDRLRVVYEEFVKLKKETAPLAEKNLKELDEEWHQKSQA
FDDLQGLLVCLKVEKDSVEILVPQVENADRLLHEMTILKEQIEDLEYKLDARGQGNSSME
EIQSQITIVQNKRDSLNMDIEKLRQEHTYMQNDLSNMQMRWHALREEKLKALAILDKFKR
AEKELERLHEEKAQVELNEKHLEETVVPLSKEKEKLLRDHRDLRSKLEHEHEGLAKIKNS
YEQGVQALLKLAFKIKEYLDSKKGERLAELQEKHHRYESKKRDYDVQKQEISADLNKSKE
VLRNQDQLKRNIDDNLNYRRTKADVDQLTQEIQSLEDKKEKIGGVSIFEADLRKHIQERE
RLLSELNRCQGTLSVYHCNISRHKLDLKQAQYNDIDKRYFNQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISILSDSDGVGTRSYSYRVIMQT
GDAELEMRGRCSAGQKILWTTTNQTLSGTKQDEVLASLIIRLALAETFCLNCGILALDEP
TTNLDGPNAESLASALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVTKDE
HQHSIIEAQEIFD
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagttgataagatgctgatcaaaggcatccggagcttcgaccctgagaacaaa
catgttattaccttctacaagccactgacgctgatcgttggtccaaatggagctggcaaa
acgaccattattgaaggcttaaagtatgcctgcactggcgagttgccccctaatgcgagg
tcgggtcatagtttcatccacgatccaaaggttgctggggaaactgagacgaaggcacaa
ataaagttgagatttaagactgcggctggaaaggatgttgtgtgcataagatcatttcag
ttaactcagaaggcgtcaaaaatggagtacaaagctatcgagagtgtcctgcagactatt
aatccccacacaggagagaaagtatgcctcagctacagatgtgctgatatggatagagaa
gttcctgttcttatgggtgtctcaaaggccgtcctggagaatgttatttttgtgcaccag
gatgatgctaattggccactgcaagatccctcaactttgaaaaagaagtttgatgatatc
ttttctgctaccagatatacaaaagctcttgaggtgattaaaaagctccacaaggaccaa
gctcaagaaataaagacatacaagctgaagttggagaaccttcagaccttaaaagatgca
gcatttaagcttagggaaagtattgctcaagatcaagagagaaccgaatctttcatttct
caaatgcaagaactggaacagaacattcaaaatgtggagcgtaagatctcttccacggaa
acaactttaaaggaattgcaggcggtgcaagatgagatatcaatcaaggatactaagcga
agcatgttgttcaagctccagcagacccagtatgctaatctggctgaagaaaatgaagac
actgatgaggacttgaaggaatggcaatcgaaatttgaagaaaaaattgctcagttggag
tccaaaataagaaagctagagaggcacatgaatgacgtggaaactgagagtacacttacc
tcacagcagattaatgcatccacacgggagattgcaaagcttcaagctgaagctgaaggt
tatgaagctgtgaagcatgaacgtgatacagcaattcagaagttcttttcggagcataat
ctgggacctcttcctaatttgcctctaagcaatgaagtagcatttaaccttattaatcaa
gctaaaatgaggttgatggatcttgagacagacttgctggataaaaagaaagctagtgaa
acggagctgaaatctttatgggatagatatgtgggtgcaagcaaccagtgcagtgaatct
gaaggtcagaggcaggccaaaatagcgatgaaggtaagcatcttgaagcagatagaagag
aaagagaatgaacgagatgaggctgagattgaactatcaaaccataatctttcacgcatt
gatgagaaggaaaagaacacgcacatggaggtggagaggaagtctactcaattgaaagag
agaaattatgagttcaacataaaccaaaagcaacttgaaatatccagtttggatcagagg
attaaaggtctttatcgtgataaagatgttatggctagtgactctgaggatagagtgaag
ttagatgtaaaaagagacgaattagaaggcctcaagaaaaaacataagaagatagttgat
gagcacaaggataaaattaagagtgtgctgaaagggaggtttccttctgacaaggatatc
aaaaaggagatcacacatgctctgagtcttgtcagacaagagtatgatgatttgaacagt
aaatctcatgaagctgaaagggagatgaagttggtccagatgaaaagagaagatctaaat
aataatctgaacaaatttcacaaagatatggaagcaaagagaagatttattgactcaaaa
cttcaagcattggctcagatttcttttgaggtcgagtccttcccaaaagttttactcgat
gctatggagaaaagagatgcccagaaaagcaattatgatgctgccaaagggatgaaagac
ttgtttgaaccttttgaaagttctgcacgtctacgtcatgcttgtccatgctgtgatcgc
ggtttctctcttgtagaggaggatgagtttgttgaaaagcaaagaacgaagagtaaaaat
gctgatgagatcgtgaataaattagctgcagatttttcaaaggctgacttacatttccag
cagttggacagacttcgtgtggtttatgaggaatttgttaagcttaagaaagaaactgct
cctttggcagagaaaaacttgaaagagcttgatgaggagtggcatcagaagtctcaggca
ttcgatgatcttcagggtcttttagtttgtctgaaggttgagaaggattctgtagagatc
ctggtcccgcaagtagaaaatgctgacaggcttttacatgagatgacaattttgaaagag
caaattgaagatttggaatataagcttgatgctcgtgggcaaggaaacagttccatggag
gaaattcagtctcagataaccattgtccaaaacaaaagggatagtttgaacatggatatt
gaaaagcttagacaggaacatacctatatgcagaatgatttgtcaaatatgcagatgagg
tggcatgctctgagggaggagaagttgaaggctttagctattttggataagttcaagaga
gcagaaaaggaattagaacgtttacatgaggaaaaagctcaagtggaactcaatgagaag
catttggaagaaactgttgtccctttgtccaaggagaaagagaagttactgagggaccac
cgggacttgagatccaagcttgaacatgaacatgaagggctagctaaaataaaaaatagt
tatgagcaaggtgttcaggccctgctgaaattggcttttaagatcaaggaatatcttgat
tcaaaaaaaggggaaaggctggcagaattacaagagaagcatcatcgatatgaatctaag
aaacgtgactatgatgtccagaaacaggaaatatctgctgatttgaacaaaagtaaagaa
gttttaaggaatcaagatcaattgaaacgaaacatcgatgataatttgaactataggaga
acaaaggctgatgttgaccaactcacccaggaaatacaatcattagaagataagaaggaa
aagattggtggggtttctatatttgaagctgatcttagaaagcacattcaagaaagagaa
agacttctttctgagctcaacagatgtcaaggcaccttgtcagtgtatcattgcaatatt
tcaagacataaactggaccttaaacaagcacagtacaatgatattgacaagcgttacttt
aaccagctgatccagctcaagacaactgaaatggctaacaaggacctggacagatactac
aatgcacttgataaagctcttatgcgattccacactatgaagatggaggaaataaataaa
ataataagggaactttggcagcaaacatacaggggccaggacatagattatataagcatc
ctttcagattctgatggtgttggtactcgatcttatagttaccgtgtcatcatgcaaact
ggtgatgctgagctggaaatgcgaggtcgctgtagtgctggtcaaaagatactgtggaca
acgaccaaccagacactcagtggcaccaaacaagatgaggtccttgcttctcttattata
agattggcacttgcagaaacattttgtctcaattgtggtatacttgctctagatgagccc
accacaaatttagatggtccaaatgccgaaagtctagcctcagccctcttaagaattatg
gaggataggaagggtcaagagaattttcaactcatcgtgattactcatgatgaacgattt
gctcagttaattggtcaacgacagcatgctgagagatattaccgtgtcacaaaggatgaa
catcaacacagtatcatcgaggcacaagagatatttgactga
DBGET
integrated database retrieval system
