Aristolochia californica: 137952354
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Entry
137952354 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137952354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137952354
03012 Translation factors [BR:
acak03012
]
137952354
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137952354
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137952354
Translation factors [BR:
acak03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137952354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
DEAD
Helicase_C
HA2_C
HA2_N
Ank_5
Ank_2
ATPase
nSTAND3
AAA_22
AAA_19
NPHP3_N
ResIII
Rad17
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
137952354
NCBI-ProteinID:
XP_068655594
LinkDB
All DBs
Position
Unknown
AA seq
1295 aa
AA seq
DB search
MLASSSFINNTAVAFIHGLIVSYAHYMPVLKFGLVKNIEEQTPKTKYRAATTIPGLLSCN
AIKLILKKERTRIKISKLDVSLSAKKQKMGRRQKKGTGLQEKSPSASETVRIQIYKRLEE
FRASDAEVLTFESTLTNPERAVVHEVCKKMGMVSKSSGHGNNRCVSVNKNKKKLDPRRKE
KEDISCLAFSEASMEVLRDLFTRYPPGDGELSEQTRTNLSKKIGKICTKNDNCFSKPSMT
KEEIAKKVESLTSRLSKDPQLRQIAQEKSKLPITSFKDVITSAAESNQVLLVSGETGCGK
TTQVPQFLLDHLWSKGEVCKIVCTQPRRISAISVAERISYERGESVGDSVGYKIRLESKG
GKQSSIMFCTNGVLLRMLIDIGGGISKSKAENKSLKDINFGITHIIVDEIHERDRFADFM
LTILRDLLPSCPHLRLILMSATLDAERFSQYFGGCPIIRVPGFTYPVKIFHLEDVLAILS
SAEGNHLNHKDFSGPMEDTELNEDYGTALDDSIELAWSGDEFDPLLELVSTKATSKILNY
QHSITGASPLMAFSRKGRVGDVCILLSYGVDCYLRAKDGSTALDYAQIANQDGVVEVLKK
HMESSNSESEEKQQLLEKYLSSVNPEHIDTMLIERLLRKICLDSSEGAILVFLPGWDDIN
QTRERLLCSPFFKDSSKFLIISLHSMIPSVEQKKVFRRPGPGVRKIILSTNIAETAVTID
DVIYVIDSGRMKEKSYDPYNNVSTLHSSWVSKASARQREGRAGRCQPGICYHLFSRTRAA
SLPDFQIPEIKRMPIEELCLQVKLLDPDCKIVDYIQKTLDPPVLETIRNGIIVLQDIGAL
TQDQQLTELGEKLGSLPVHPLISKMLLFAILMNCLDPALTLACASDYRDPFLLPMAPDEK
KRAAAAKSELASLYGGNSDQLIVIAAYECWRRAKDKGLEAQFCSRYFVSKTTMNMLLGMR
KQLLNELLRNGFIPEDPTGCSLNAHDPGILHSVLVAGLYPMVGRLLPPFKNNRRAVVETA
SGAKVRLHPHSSNFKLSFANFSSRPLIVYDEITRGDGGMYIKNCTVVGPYPLLLLATEMV
VAPADDDGDESDDDEDSESEEDDEVEEGASASEQQERIMSSADNTVAVVADRWLKFRATA
LDVAQLYCLRERLSAAILFKVKHPRKDLPSVLGASIYAIICLLSFDGVSGISSALESVES
ITSKVNAAGIGKSPRGKFQRQDNVSGFLRSLMADDKSSHYHSHFRKSRNTESAGHSKSPV
RRNKAPGVLPQGSGGPLLTSGGSFKRRRGIGAREN
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgttggcatcgtcttcgtttatcaacaacactgccgttgccttcattcacgggcttatc
gtttcttatgctcactatatgccagtcttgaagtttggattggtgaaaaatattgaagaa
caaacgccgaaaactaagtatagggcggcgacaaccattccaggtctgttatcgtgtaat
gcaataaaactgatacttaaaaaggaacgaacgagaatcaaaatctcgaagctcgacgtc
tccctttcagcaaagaagcaaaaaatggggaggcgacagaagaagggaacgggtctccaa
gaaaaaagtccaagtgcctctgaaactgtacgtattcaaatctataaacgcctggaagag
ttccgtgcaagtgatgctgaagtgctcacttttgaatccacattaactaatcctgagcga
gctgtggtgcatgaggtatgcaaaaagatgggcatggtgtcaaaaagctcagggcatgga
aacaataggtgtgtttctgttaataaaaataaaaagaagctggatccacggaggaaagag
aaggaggatatcagttgtttagcattttctgaagcatcaatggaagttttacgtgattta
tttactcgttatcctcctggtgatggggaacttagtgagcaaactcgtactaatcttagt
aagaaaattggtaaaatatgtactaagaatgataattgcttctctaaaccttctatgaca
aaggaggaaattgcaaaaaaagtggaatcacttacctcaagactgagtaaggatccacaa
ttaagacagattgcccaagaaaaatctaaactccccataacatccttcaaggatgttatc
acatctgctgcagaatctaaccaggttcttttagtatctggtgagactggatgcgggaaa
actacacaggtcccccaatttcttctagatcacctttggagtaaaggtgaagtgtgtaag
attgtttgtacccagccccgaagaatatcagcaatatcagttgctgagagaatctcatat
gaaaggggagagagtgttggagacagtgttggttacaaaatacgattggaatctaaaggt
gggaagcagtcgtctataatgttttgtacaaatggtgttcttttgagaatgctgattgac
ataggtggaggtatttccaagtcaaaagctgaaaataagtcattgaaggatatcaatttt
ggaataacacacatcattgtggatgaaattcatgagcgagaccgttttgcagattttatg
ctcactattctcagagacctgctaccttcatgtcctcatctgcgactgatactcatgagc
gctacgctcgatgcggagcgtttctcccaatattttggtggctgtccaatcattcgtgtt
cctggtttcacttatccagttaaaatatttcacttagaagatgttcttgctatactaagt
tcagcagaaggcaaccatctcaaccacaaggatttctctgggcccatggaagacactgag
ttgaatgaagattacgggactgcattggatgactccattgaactggcatggtccggtgat
gagtttgaccccttgcttgaactagtttccaccaaggccacctcaaaaatattaaactac
caacattctataactggtgcttcacctttgatggctttctctagaaaaggtcgagttggt
gatgtttgcatactgctgtcatatggtgtagattgctatttacgtgccaaagatgggagt
actgcacttgattatgcacagattgcaaaccaagatggagttgttgaggttctgaaaaaa
catatggagagtagtaactcagagtctgaggaaaaacaacaattgctcgagaaatattta
tcgagcgtgaatccagagcacatagatactatgcttattgagagactcttaaggaaaata
tgtcttgactccagtgaaggagctatccttgtttttcttccaggttgggatgatataaac
caaacccgtgagagattactttgttcaccattttttaaggattcttctaagtttcttata
atctcccttcattctatgattccatctgtggagcagaaaaaggtttttagacgccctgga
cctggggttcgaaaaatcatactttcaactaatattgctgagacagcagttaccattgat
gacgttatttatgttatagacagtggaagaatgaaagagaaaagttatgatccttataac
aatgtgtccacactccattcatcctgggtttcaaaagctagcgcaaggcaaagggaggga
cgggctggacggtgtcagccggggatttgttaccatcttttttcaagaactcgtgcagct
tctctaccagatttccaaattcctgaaatcaagaggatgccaatcgaggaactctgcttg
caggtgaaactacttgaccctgactgcaaaatagttgactacatccagaagactttggat
cccccagtacttgaaacaattagaaatggaatcattgttcttcaagacattggtgcatta
acacaagatcaacaactcacggaacttggcgagaaacttggctctctccctgtccatcca
ttgatcagcaaaatgctactttttgctattttgatgaactgcctggatcctgcactaact
ctagcttgtgcctcagattatcgggatccctttcttcttcccatggctcctgatgagaag
aagagagcagctgcagccaaatctgaattagcttcattatatgggggcaacagtgaccag
ctaattgttatagctgcatatgagtgttggagacgtgcaaaagataagggcctagaggct
caattttgttcacgatattttgtctctaaaaccaccatgaatatgttgttgggtatgcga
aaacagcttctgaatgaactcctccgaaatgggtttatccctgaagatccgactggttgc
agcttgaatgctcatgatccaggcatccttcattctgttttagttgctggtttgtatcca
atggttggaagactacttccaccatttaaaaacaacagaagggcagttgtggaaacggca
agtggtgccaaggttcgattgcatcctcattcttctaatttcaagctgtcttttgctaac
tttagttcacgcccactgattgtatatgatgagattacacgtggggatggagggatgtat
ataaagaactgtacagtggtgggaccatatccattactgttactcgcaacagagatggtg
gtggcccccgcagatgatgatggagatgagagtgatgacgacgaagattctgaaagtgag
gaggatgacgaagtcgaggaaggagcttcagcctctgagcaacaagaacggattatgtct
tctgctgataatactgttgctgttgtggctgatcgatggcttaaattccgggctacagca
cttgatgtggctcagctttactgcttgagggagaggttgtcagctgccattctgttcaaa
gtgaaacacccacggaaagatctaccatctgttttaggtgcctccatttatgcaattatc
tgtcttctttcttttgatggggtttctggaatttcatcagcactggaatctgttgagtcg
ataacgtccaaggtcaacgctgcaggaataggcaagtcacccagagggaaatttcagcga
caggacaatgtaagtgggtttcttagatcacttatggcagatgacaaaagcagtcattat
cattcccattttcggaagtcccggaacactgagtctgcaggccactcaaaatctccagtg
aggagaaacaaggccccaggggttctgcctcaaggttcagggggtcccttgctcacaagt
ggtggttcttttaaacgaagacgtggaattggagccagggaaaactaa
DBGET
integrated database retrieval system
