Aristolochia californica: 137952505
Help
Entry
137952505 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137952505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137952505
03012 Translation factors [BR:
acak03012
]
137952505
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137952505
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137952505
Translation factors [BR:
acak03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137952505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
HA2_C
Helicase_C
DEAD
HA2_N
nSTAND3
AAA_22
ATPase
Ank_5
AAA_19
Sigma54_activ_2
NPHP3_N
AAA_7
ResIII
AAA_14
Ank_2
AAA_16
Rad17
ABC_tran
Sigma54_activat
ATPase_2
PhoH
Motif
Other DBs
NCBI-GeneID:
137952505
NCBI-ProteinID:
XP_068655675
LinkDB
All DBs
Position
Unknown
AA seq
1240 aa
AA seq
DB search
MGRRQKMGMGLQEKSLNVSETVRIQISKRLEKFRAGDAEVLTFESTLSNPERAVVHEICK
KMGMESKSSGRGNNRCVSVYKNKMKQDPRRKEKEDVSYLAFSEASMEVLRDLFIHYPPVD
GELSEETRSNLSRKVSKIGTKNDSSFSKPSMTKEEIAKKLESLTSRVNKDPQLRQTAQEQ
ARLPIASFKDVITSAAESNQVLLITGETGCGKTTQVPQFLLDHLWSKGEVCKIVCTQPRR
ISAISVAERISYERGESVGDSVGYKIRLESKGGKQSSIMFCTNGVLLRMLIDIGGVISKS
KAENKSLKDINFGITHIIVDEIHERDRFADFMLAILRDLLPSCPHLRLILMSATLDADHF
SQYFGGCPIIRVPGFTYPVKTFYLEDVLAILSSAEDNHLYPTDLSGPMEDTELNEDYRTA
LDEAIELAWSSDEFDPLLELVSTKATSKILNYQHSITGASPLMIFSGKGRVGDVCMLLSY
GVDCYLCAKDGSIALDYAQIANQDGVVEVLKKHMGNSNSESEEKQQLLEKYLSSINPEHI
DTILIERLLRKICLDSSEGAVLVFLPGWDDINQTRERLLCSPFFKDSSKFIIISLHSMIP
SVEQKKVFRRPGPGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHSS
WVSKASASQREGRAGRCQPGICYHLFSRTRAASLPDFQIPEIKRMPIEELCLQVKLLDPD
CKIVDYIQKTLDPPVLETIRNGIIVLQDIGAVTHDEQLTELGRKLGSLPVHPSISKMLLF
AVLMNCLDPALTLACASDYRDPFLLPMAPDEKKRAAAAKSELASLYGGNSDQLTVIAAFE
CWRRAKDKGLEAQFCSRYFVSKATMNMLFGMRKQLLNELLRNGFIPEEFNGCSLNAQDPG
ILHAVLVAGLYPMVGRLLPPIKKNRRAIVETASGAKVRLHPHSSNFKLSFANFSSCPLIV
YDEITRGDGGMYIKNCSMVGPYPLLLLATEMVVAPADEDGNESDDDEDSGSEEDDEVGEG
TSASMQQERIMSSADNTVAVVADRWLKFQATALDVAQLYCLRERLSAAILFKVKHPREDL
PPALGASIYAIICLLSFDGLSGISSALESVESITSMVNAAGIGKPLKGKFQRQDSVSGFL
RSIWADDRSSHHHAHFRKSQMAQSVQLPRNDSPGHSKSPIRRSKTPGVLRQGSGGPLPSS
GDSFKRRRGIGASSLTNQCSQSYGEIMEVNHCWLHHDAKV
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggggaggcgacagaagatgggaatgggtctccaagaaaaaagcctaaatgtctctgaa
accgtacgcattcaaatctctaaacgtctggaaaagttccgtgcaggagatgctgaagtg
ctcacctttgaatctacattatctaatcctgagagagctgtggtgcatgagatttgcaaa
aagatgggcatggagtcaaaaagctctgggcgtggaaacaatagatgtgtatctgtttat
aaaaataaaatgaagcaggatccacggagaaaagagaaggaggatgtcagttatttagca
ttttcagaagcatcaatggaagttttacgtgatttatttattcattatcctcctgttgat
ggggagcttagtgaggaaacccgtagtaatcttagtcggaaagttagtaaaataggtact
aagaatgatagtagcttctctaaaccttctatgaccaaggaggaaattgcaaaaaaattg
gaatcactaacttcaagagtgaataaggaccctcagttaagacagactgcccaagaacaa
gctagactccccatagcatccttcaaggatgtcatcacgtcagctgcagaatctaaccag
gttcttttaataactggtgagacaggatgtgggaaaactacacaggtaccccaatttctt
ctggatcacctgtggagtaaaggtgaagtgtgtaagattgtttgtacccagccccgaaga
atatcagcaatatcagttgctgagagaatctcatatgaaagaggagaaagtgttggagac
agtgttggttacaagatacgattggaatctaaaggtgggaagcagtcgtccataatgttt
tgcacaaatggtgttcttctgagaatgctgattgacattgggggagttatatccaagtca
aaagctgaaaataagtcattgaaggatatcaattttggaataacacatatcattgtggat
gaaattcatgagcgagaccgttttgcggattttatgctcgctattctcagagacctgcta
ccatcatgtcctcacctgcgtctgatactcatgagtgctacactcgatgcagaccatttc
tcccaatattttggtggctgcccaatcattcgtgttcctggtttcacttatccagttaaa
acattttacttagaagatgttcttgctatactaagttcagcagaagacaatcatctctac
cccacagacctctctgggcccatggaggacactgaattgaatgaagactataggactgca
ttggatgaagccattgaacttgcatggtctagtgatgagtttgaccccttgcttgaacta
gtttccaccaaggctacctcaaaaatattaaattaccagcattctattactggtgcttca
cctttgatgattttctctggaaaaggtcgagttggggatgtttgcatgcttctgtcatat
ggtgtagattgctatttgtgtgccaaagatgggagtattgcacttgattatgctcaaata
gcaaaccaagatggagttgttgaggttctgaaaaaacatatggggaatagtaactcagag
tctgaggaaaagcaacagttacttgagaaatatctatcgagcataaatccagagcatata
gatactatacttattgagagactcttgaggaaaatatgtcttgattccagtgaaggagct
gttcttgtttttcttccaggttgggatgatataaatcaaacccgtgagagattactttgt
tcaccattttttaaggattcttccaagtttataataatctcccttcattctatgattcca
tctgtggaacagaaaaaggtctttagacgccctggtcctggggttcgaaaaatcatactt
tcaactaatattgctgagacagctgttaccatcgatgatgttgtttatgttatagacagt
ggaagaatgaaagagaaaagttatgatccttacaacaatgtgtccacgctccattcatct
tgggtttcaaaagctagcgcaagccaaagggagggacgggctggtcggtgtcagccaggg
atttgttaccatcttttttcaagaactcgtgcagcttctctaccagatttccaaattcct
gagatcaaaaggatgccaattgaggaactctgcttgcaggtgaaactacttgaccctgac
tgcaaaatagttgattacatccagaagactttggatcctcctgtccttgaaacaattagg
aatggtatcattgttcttcaagatattggtgcggtaacacatgatgaacagctcacggaa
cttggcaggaaacttggttctcttcctgtccatccatcgatcagcaagatgttacttttt
gctgttttgatgaactgcttggatcctgcgctaactctagcctgtgcctcagattatcgg
gatccctttcttcttcccatggctcctgatgagaagaagagagcagctgcagccaaatct
gaattagcttcattatatgggggcaacagtgaccaactaactgttatagctgcatttgag
tgttggagacgtgcaaaagataagggtctagaagctcagttttgttctcgatatttcgtc
tcaaaagccaccatgaatatgttgtttggcatgcgaaagcagcttttaaatgaacttctt
cgaaatgggtttatccctgaagaattcaatggttgcagcttgaacgctcaagatccaggc
atccttcatgctgttttagttgctggtctgtatccaatggtgggaaggctacttccacca
attaaaaaaaacagaagggcaattgtggaaacagcaagtggtgccaaggttcgattgcat
cctcattcttctaatttcaagctgtcttttgccaactttagttcatgcccattgattgta
tatgacgagattacacgtggggatggagggatgtacataaagaactgttcgatggtagga
ccatacccattactgttacttgcaacggagatggtggtggccccagcagatgaggatggg
aatgagagtgatgatgatgaagattctggaagtgaggaggatgacgaagttggggaagga
acatcagcttctatgcaacaagaacggattatgtcttctgctgataatacagtcgcagtt
gtggctgatcgatggcttaaattccaggctacagcacttgatgtagctcagctttactgc
ttgagggagaggttgtcagctgccattctgttcaaagtaaagcacccacgtgaagaccta
cctcctgctctgggtgcctccatttatgccattatctgtcttctttcttttgatgggctt
tctggaatttcatcagcattggaatctgtggagtcaataacgtccatggtaaatgctgct
ggaataggcaagccactcaaagggaaatttcaacgacaagattctgtaagtggctttctt
agatcaatttgggcagatgacagaagcagtcatcatcatgcccattttcggaagtcccag
atggctcaatcggtgcagctgcctcgcaatgactctccaggccattcaaaatctccgata
aggagaagcaaaaccccaggggttctgcgtcaaggttcagggggtcccttaccttcaagc
ggtgattcttttaaacgacgacgtggaattggagctagctccctaaccaatcagtgctcc
caatcttatggtgaaatcatggaggtaaaccattgttggcttcaccacgatgcaaaagtg
tag
DBGET
integrated database retrieval system
