Aristolochia californica: 137952916
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Entry
137952916 CDS
T10486
Name
(GenBank) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137952916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acak03041
]
137952916
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137952916
Spliceosome [BR:
acak03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137952916
Complex C
U4/U6.U5 tri-SnRNP related factors
137952916
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
SRP54
DUF5661
AAA_16
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
137952916
NCBI-ProteinID:
XP_068656128
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MSGDRDLKVWVSDKLHSLMGYSQVAVVQFVIGLSKKASSPAEITQQLIGFGCPSSADTQI
FAEEIFNKVPHKLTGQSHYQKEEREAALLVRKQRTYEILDADDEDDDNVGTTQHAGEISS
VTVGSMSKKADARQRHFRRKNENEDSEEEEEISRGDVKRRVRRRISDTDSNDDEVESEEA
RIRDQEERVQLERNIRARDAAGTRKLMESKQSLKDEEEAIRRSIAQEENETLTLRKVSRQ
EYLKKREQKKLDELRDEIEDEQYLFAGVKLTEAEIRQMRHKREIYELSKKHLEDLDDIGE
YRMPEAYDQEGVINQDKRFAAAVQRYRDPGAADKMNPFAEQEAWEEHQIGKATLQFGSKD
KQQKLEEYEYVHDDYIEFIKASVMDGIQNEYDLLPEKDENLSTKSALQKLQDERKTLPIY
SFREDLLEAVDKYQVIVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAA
RVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAH
ERTLSTDILFGLVKDISRFRTDLKLLISSATLDAEKFSDYFDSAPIFSIPGRRYPVDIHY
TKSPEADYLDAAIVTVLQIHVTQSPGDILVFLTGQEEIETAEENLKYRTRSLGTKIAELI
ICPIYANLPTELQSKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKIKSYNPR
TGMESLLVNPISKASANQRAGRSGRTGPGKCFRLYTAYNYHNDLEDNTVPEIQRTNLANV
VLTLKSLGINDLYTFDFMDPPPAEALLKALEMLYALSALNSVGELTKVGRRMAEFPLDPM
LSKMIVASDKYKCSEDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHFALL
KVYDSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNPSDLDGIKKA
ITSGFFYHAAQLQKSGTYRTVKNPQTVHIHPSSGLAQVLPRFVIYHELVLTTKEYMRQVS
EIKRDWLGEIAPHYYKLKEIEDAGAKKMPRGEGRAAKD
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgaccgtgacctgaaagtatgggtgtcggacaagcttcactcgctaatgggt
tactcgcaagttgcagtagtgcaatttgtaatcgggttgtctaagaaagcctcgtcacct
gcagaaatcacacaacagctcattggttttggatgtccttcatcagctgatactcaaatt
tttgctgaagagatatttaataaagtgccgcataaattaactggtcaaagccactaccaa
aaagaggaaagagaagcagctttgttggtaaggaagcaaaggacgtacgaaattttggat
gctgatgatgaggatgatgacaatgttgggacaacgcaacatgctggtgaaatttcttct
gttactgttggctctatgtccaaaaaggcagatgctcgccagaggcattttaggaggaaa
aatgagaatgaagatagtgaagaagaagaggagatttcaaggggagatgtaaaaagacga
gtccgaaggcgaatatcagacacggatagcaatgatgatgaagtagagtctgaggaagcc
aggatacgtgatcaagaagagcgggttcagttagagagaaatataagggcacgagatgca
gctgggacaagaaagctgatggagtcaaagcagtcacttaaggatgaagaggaagcaatt
cgaagatctatagcacaggaggaaaatgagactttgactttaaggaaagtatcaagacaa
gagtatcttaagaaaagagagcaaaagaagcttgatgagctgagggatgaaatagaagac
gagcagtatctctttgcaggtgttaagttaacagaagctgaaattcgtcaaatgaggcac
aagagagaaatttatgagctttcaaaaaagcacttggaagatctcgatgatattggtgag
tataggatgcctgaagcctatgatcaagaaggagttataaatcaagataagagatttgca
gcagctgtgcagcgttatagggacccaggtgctgcagataagatgaatccatttgctgag
caagaagcatgggaagaacatcaaattggaaaggcaaccctacagtttggttcaaaagat
aaacaacagaaattggaagagtatgagtatgtccatgatgattatattgagttcatcaag
gcctcagtgatggatggtattcagaatgaatatgatttgctgccggagaaggatgagaat
ttgagtacaaaatcagcattgcagaagcttcaggatgagagaaaaactttgcctatctat
tcgtttcgggaggacctactcgaggcagttgataagtatcaggttattgtcattgttgga
gaaactggttcaggaaagaccactcagatacctcaatatcttcatgaagctggatataca
aaaagaggaaagattggatgcactcaacctcgacgtgtagcagctatgagtgttgctgca
cgagtttctcaagaaatgggtgtcaaacttggtcatgaggttggttattcaatacgcttt
gaagactgtacatccgaaaaaactattctaaagtatatgactgatggcatgttattgcgt
gaatttcttggtgaacctgatttggcaagctacagtgtaattatggtggatgaggcacac
gagcggacactttcaactgatattttatttggcttagttaaggatatttctcgctttaga
accgatctgaagttactgatttcaagtgctacactagatgctgagaagtttagtgattac
tttgactcggctcccatttttagtataccagggagaagatatcctgtggatattcattac
acaaaatcacctgaagcagattatttggatgctgcaattgtgaccgtccttcagatacat
gttactcaatcccctggtgatattcttgtctttctcactgggcaagaggagattgaaaca
gcagaagagaatctcaagtaccgaacccggtctttagggacaaaaatagctgaacttata
atctgtcctatatacgcaaaccttccaacagagcttcaatctaagatttttgaaccaact
cctgaaggtgcccgcaaagttgttttggctactaatattgcggaaacatcattaacaatt
gatggaattaaatatgtgatagatcctggtttctgtaagattaaatcatataaccctcgg
actggtatggagtcactacttgttaatcccatatctaaagcctctgcaaaccagagagcc
ggcaggtcaggacgaacaggccctggtaaatgcttccgcttatatactgcctataactac
cacaatgatttagaagataatactgtgccagagatacagaggactaaccttgcaaatgtc
gttctcacacttaagagcctgggtattaatgacttgtacacttttgatttcatggatcct
ccaccagctgaagcattacttaaagctcttgaaatgctttatgcccttagtgcactaaat
agtgttggagagctgacaaaagtgggaagaaggatggctgaatttccccttgacccaatg
ctgtcgaagatgattgtagcttcagataaatataagtgttcagaggatattatttcaatt
gctgcaatgctttctgttgggaattcaattttttaccgacctaaggacaaacaagttcat
gctgacaatgcaaggatgaatttccacaccgggaatgtgggagaccattttgcgttgctg
aaggtctatgattcatggagagaaacaaattactctacacaatggtgttatgaaaactac
attcaggtccggagcatgaaacgtgccagagatattagagatcagttggaggggctgctg
gagcgggttgaaattgaactcacttccaatcccagtgacttggatggaataaagaaggcc
ataacatcaggtttcttttatcatgcggcacaactccaaaagagtgggacataccggaca
gtaaaaaatccacaaactgtgcatattcatccaagttctgggcttgcacaggttcttccc
agatttgtgatttatcatgaattggttttgacaacaaaagagtatatgcgacaggtatca
gaaattaaaagggactggctgggggagatcgcaccacactattataagttgaaagaaatt
gaagatgctggtgccaaaaaaatgcccagaggtgaaggtcgagctgccaaggactga
DBGET
integrated database retrieval system
