Aristolochia californica: 137952981
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Entry
137952981 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137952981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137952981
03012 Translation factors [BR:
acak03012
]
137952981
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137952981
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137952981
Translation factors [BR:
acak03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137952981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
Cas3-like_C_2
T2SSE
Motif
Other DBs
NCBI-GeneID:
137952981
NCBI-ProteinID:
XP_068656237
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MSSARPRGRGGGGRREGGGRGGGGRGGGEQRWWDPVWRAERLAKIKKEVEVLNEDEWRLM
MQQMKGGNQQELIVKKNYGREGQQTLANMAQQLGLYFHAYNKGKTLVVSKVPLPNYRADL
DEWHGSTHKEIQMSKETERRVEDLLASSKQALPIDNSSGASSQSGKYSSSSRISKGALLL
DGDVAKEDHNAELKNLQERMKASAGAKLMQSFRDKLPAYKVRAEFLRAVAENQVLVVSGE
TGCGKTTQLPQFILEDAISRNCGAQCNIICTQPRRISAISVSTRVSQERGECLGETVGYQ
IRLEAKRSYRTHLLFCTTGVLLRQLVEDPNLTSVSHLVVDEIHERGMNEDFLLIILRDIL
PRRRDLRLILMSATINADMFSKYFGNVPTIHIPGLTFPVTELFLEDVLEKTRYNIEAEYD
SFQGNGKKRRRQSQLQKDPLGDLFEDVDIESYYKSYSASARRSLEAWNPFQFDYGLIEAT
IEYICQYGGEGAILVFLTGWDEISKLLEKIKGNKLLGDSNKCLILPLHGSMSTANQREIF
DRPPRSLRKIVVATNIAESSITIDDVVHVVDCGKAKETSYDALNKLACLLPSWISKASAH
QRRGRAGRVQPGVCYRLYPKLIYDAMPQYQLPEILRTPLQELCLHIKSLQLGKISPFLAK
ALQPPDPQSVQNAIELLKTIGALDEIEELTPLGRHLCTLPLDPNIGKMLLMGCIFQCLDP
ALTIAAALAHRDPFVLPISRKEEADAAKRSFAGDSHSDHIALLKAFDGWKRSGKERAFCW
QYFLSPMTLQMMDNMRNQFRELLSDIGFLEKARSPEVYNHYSDDLEMVCAVLCAGLYPNV
VQCKERRKRTHLYSKDVGKVDIHPSSVNAGVRKFPLPYIIYSEKVKTTNIYITHSTNISD
YALLLFGGNFAPSKSREGIEMLGGYLHFSASKSVLQLIQTLRAELDKLLRRKIEVPELDI
SAEGKGVVAAAIELLHSQNVLQ
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgctcgaccacgcggaaggggtggtggtggacgaagagaaggtggtggaaga
ggaggtggaggaagaggcggcggcgagcagcgttggtgggaccctgtctggagagctgag
cgtctggctaagattaagaaagaggtagaagtgctcaatgaggatgagtggagacttatg
atgcagcaaatgaaaggaggaaaccagcaagagttgattgttaagaagaactatggcagg
gaagggcaacaaactctggccaatatggctcaacaactaggactttacttccatgcatat
aacaaaggaaagacacttgttgtcagtaaagtgccgttgccaaattaccgagcagatctt
gatgaatggcatggatcaacccacaaagagattcagatgtccaaagagactgagagaaga
gttgaagatcttttagcaagctcaaaacaagcattgcccattgacaattcttccggtgca
tctagtcagtcaggcaaatattctagctcatcaagaataagtaaaggggctttactattg
gatggggatgttgcaaaggaggaccacaatgcggaacttaagaatttgcaggaaaggatg
aaggcaagtgctggtgcaaagttgatgcagtcattcagggataagctacccgcctacaaa
gtcagagctgagtttttgagagctgtggcagaaaatcaggtgttggtggtttcaggagag
acaggctgtggcaagactacacagcttccccaatttatattggaggatgcaatttcacgt
aattgtggggcccaatgcaacataatatgcacacagccccgtagaatctctgctatatcc
gtttctactcgggtatctcaagaaaggggtgaatgtctgggagaaactgttggctatcaa
atccgcttggaagcgaaacgttcataccgcacacaccttctattttgtacaacaggagtg
ttactaaggcaattggtagaagatcctaatttgaccagtgttagccatttagtagtggat
gaaattcatgaaagaggcatgaatgaggactttctattaataattttacgggacattctt
cctcgaagacgggatctgcgtcttattctcatgagtgctaccatcaatgcagatatgttt
tccaagtattttggaaatgtgccgacaattcacataccgggattaacttttccagtaaca
gaactgtttttagaagatgtgcttgagaaaactcggtataatattgaggcagaatatgat
agcttccaaggaaatggaaagaagagaaggagacagtcacaattgcaaaaggatcctttg
ggtgatttattcgaggatgttgatattgagtcctattacaagagttacagtgcatcagca
agacgatcactggaagcgtggaatccattccaatttgattatggactaatagaagcaacc
attgagtatatttgtcagtacggaggggaaggagcaatccttgtatttctcacaggctgg
gatgaaatatctaaacttcttgaaaagatcaaagggaataaacttcttggtgactctaac
aagtgcctaattcttcctcttcatggatcaatgtccacagctaatcagcgtgaaatattt
gatcgaccaccacgtagcttgaggaaaatagtggtggcaacaaatattgcagagagcagt
atcaccattgatgatgtggtgcacgtggtagactgtgggaaggcaaaggagactagttat
gatgctttgaacaagttggcttgtttgttaccttcttggatatcaaaggcttcagctcat
cagaggagagggcgtgcagggcgtgtgcagcctggtgtttgctacaggctttacccgaag
cttatctatgatgcaatgccgcagtaccagttacctgaaattcttcggacccctttacaa
gagctatgccttcatataaaaagtctacaacttggaaagatatctccattcctagcaaag
gctcttcaaccaccagatccccaatctgttcagaatgcgatcgaactgctgaaaacaatt
ggagcccttgatgaaatcgaggagcttactcctcttggtcgtcacctctgcactcttcct
ttggatccaaatattggaaagatgcttctcatgggatgtattttccagtgccttgatcct
gcattgacaattgctgctgctcttgcacatagggatccatttgttctgccaataagcagg
aaagaggaagctgatgctgcaaagagatcctttgctggggattctcacagtgatcatata
gcactcctcaaagcatttgatggatggaaacgcagtgggaaggaacgtgctttctgttgg
caatacttcttatctcctatgacattgcagatgatggacaacatgaggaaccagttccgt
gagcttctgtctgacattggcttcttggagaaagcaagaagcccagaggtctacaaccat
tacagtgatgatctggaaatggtatgtgcagtcctatgtgctggactttatccaaatgtc
gtccaatgtaaggaaagaaggaagaggacacatttgtacagtaaagatgttggaaaagtt
gatatccatccatcttcagttaatgctggggtccgcaagtttccactaccttacattata
tacagtgagaaggttaagaccaccaatatatacattacccactccaccaatatatctgac
tatgcattgcttctttttggcggtaactttgcacctagcaagtccagggaggggattgag
atgttgggtggatatctacatttctctgcatcgaagagtgtgctgcaacttatccagaca
ttgagagcggaacttgacaagcttttgaggaggaagattgaggtgccagagcttgacatc
tctgcagaaggcaagggagttgttgctgcagctattgaattgttacacagccagaatgtg
ctgcagtaa
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