KEGG   Aristolochia californica: 137953068
Entry
137953068         CDS       T10486                                 
Name
(GenBank) cleavage stimulation factor subunit 50 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
acak  Aristolochia californica
Pathway
acak03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:acak00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    137953068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acak03019]
    137953068
Messenger RNA biogenesis [BR:acak03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     137953068
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_NWD2_C Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_WDR41 Cytochrom_D1 REV1_C Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 137953068
NCBI-ProteinID: XP_068656367
LinkDB
Position
Unknown
AA seq 361 aa
MFDSTLAATAAYGSVPTAPVHAVDFSMVQDTKGSSKSFAKHETRHVSEHKNIARCARFSP
DGQFLATGSADQSIKLFEIAKIKQMMMPDSRDGPVRSVIRTFYDHLQLQPINDLDFHPQN
MVLISGAKDHTIKFFDFSKTVARRAFRVIQDTHNVRSVAFHPSGDFLLAGTDHPIPHLYD
VNTFQCYLSSSVQELNMNAAINQVRYSCTGALYVTASKDGVVRVWDGVTSKCVRSIVGAH
GSAEATCASFTKDQRFILSCGKDSTAKLWEVGTGKLVKQYNGAMHTQLRCQAVFNETEEF
VLSIDEPSNEVVIWDALTAEKVARWPSNHIGAPRWVEHSPTEAVFVTCGSDRSVRFWKEI
F
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgtttgattccacattagctgcaactgccgcatacggctccgtccctactgctcctgtt
catgctgttgatttcagtatggtccaggatacaaaaggttcatctaagagttttgcaaag
catgagaccagacatgtatcagagcataagaacattgccaggtgtgcaagattcagtcca
gatggtcaattccttgcaactggtagtgcagaccaatcaattaagctctttgagattgca
aagatcaagcaaatgatgatgccagattcaagggatggccctgttcgatctgttatcagg
acgttttatgatcatttgcaattgcagccaatcaacgatttggatttccatcctcaaaat
atggtgctgatatctggggcaaaggatcacaccataaagttctttgatttttcaaaaaca
gttgcaagaagggctttcagagtcatacaggatactcataatgtgcgatctgtagctttt
catccttcaggggattttcttctggcaggtacagatcatccaattccccatctgtatgat
gtcaatacttttcagtgttacctgtcatcaagtgtgcaagagctaaacatgaatgctgca
atcaaccaggtgcggtactcatgtactggtgctttgtatgtgactgcttctaaagacggt
gttgtacgagtgtgggatggtgtaacttcaaaatgtgtgcgttctattgttggggcacat
ggttctgcagaagccacctgtgcgagttttaccaaagaccaaaggttcatcctttcttgt
gggaaggactcaacagcaaagctatgggaggtgggcactggaaaattagtaaagcagtac
aatggagctatgcatacacaactacgttgccaggctgttttcaatgaaactgaagagttt
gttctatcaatcgatgagccaagcaatgaggttgttatttgggatgccctgactgctgaa
aaagttgctaggtggccatccaaccacataggtgcacctaggtgggtcgagcactcacca
acagaggctgtgtttgttacttgtgggagtgacaggtcagtccggttttggaaggaaatt
ttctag

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