Aristolochia californica: 137955383
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Entry
137955383 CDS
T10486
Name
(GenBank) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137955383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137955383
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137955383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_CcmH_CycH
TPR_Edg1
Motif
Other DBs
NCBI-GeneID:
137955383
NCBI-ProteinID:
XP_068658399
LinkDB
All DBs
Position
Unknown
AA seq
781 aa
AA seq
DB search
MADEGRAGIEDRSSVVPRENKTSEGLLVDKYNVEASEILANEALRLPITEAVPIYEQLLS
VFPTAGKFWKQYVEAYMAVNNDDATKQIFSRCLLNCQLISLWRCYIRFIRKVNEKKGAEG
LEETKKAFEFMLNYVGTDISSGPVWMEYIAFLKSMPAVTAQEESQRMTAVRKIYQKAIVT
PTHHVEQLWKDYENFENSVSRALAKGLLSEYQPKYNSARAVYRERKKYIDEIDWNMLAVP
PTGSYKEEQQYLAWKKLLTFEKGNPQRIDSVSSMKRVTFTYEQCLMYLYHYPDIWYDYVT
WHAKTGSVDSAVKIFQRALKALPDTEVLRYAYAELEESRGSIQPAKKIYESLLANGTNIT
ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNCTYHVFVAYAMMAFCLDKDPKVAHNVFE
AGLKRFMHEPGYILEYADFLCRLNDDRNVRALFERVLSSLPAEESVEIWKRFAQFENTYG
DLASMLKVEQRRKEALSGTGEEGTSMLEGSLHDVVSRYSFMDLWPCSSKDLDHLSRQEWL
AKNVNRKIDKSNLAFGTGSIDKGSSGLTTTQKTNTSSKVVYPDTSKMVVYDPMQPNGSGL
ISSAVAPGLPVLSGSMATSTAISGGGTTKALDEILKVMPPALVAFIAHLPPVEGPSPDVD
IVLSILLQSNIPTVQAQSGKTGLPQQPQQLSAGPGPTTSDLSASGRARSNQNNSTYRQSS
KRKDLERQEDDDTTTVQSRPLPRDVFRLRQLQRSRGSVTSQTGSAASGGSAFSGEPSGSS
G
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaaggtagagctggcatcgaagatcgcagtagtgtcgtaccaagggaaaac
aaaaccagtgagggcctccttgttgataaatacaacgttgaagcctcagagattctcgcc
aatgaggctctgcgtctgccaattacggaggctgttccaatatatgagcaacttctttca
gtatttcccactgcaggaaagttctggaagcagtatgttgaggcatacatggctgtcaac
aatgatgatgcaacaaaacagatattcagtcggtgtttactgaactgtcaactaatttca
ctctggcgttgctatattcgtttcatccggaaggttaacgaaaagaaaggagctgagggt
ctggaagaaactaagaaagcctttgagtttatgctcaactatgttggaactgatatttca
tctggacctgtatggatggagtacattgcatttttgaagtcaatgccggctgtgacagca
caggaagagtcacagcgcatgactgcagtacggaaaatttaccaaaaagccattgttact
ccaactcatcatgtggagcagctatggaaagactatgaaaattttgaaaattctgttagt
cgtgcactggctaaaggattgctgtctgaatatcaaccaaagtacaacagtgcacgggct
gtgtatcgagagcggaagaaatatatagatgaaatagattggaacatgcttgctgttccg
ccaactggctcgtataaggaagagcagcagtatctggcatggaagaagctcttgaccttt
gagaaaggaaatccacaaaggattgatagtgtatcctccatgaaacgagttaccttcacc
tatgagcagtgcttgatgtatttatatcattatcctgacatatggtatgactatgtcaca
tggcatgccaaaactggctcggtagattctgcagtcaaaatatttcagcgggcattgaag
gcacttcctgatactgaggtgctaaggtatgcttatgcggaattggaagaatccagaggc
tcaattcagcctgcaaagaaaatatatgaaagtcttctggcaaatggaaccaacataaca
gctcttgcacacatacaatttatccgttttttaagaagaacagaaggtgttgaagctgca
aggaagtattttttagatgctcggaaatctccgaactgtacgtaccatgtgttcgttgca
tatgccatgatggcattttgccttgacaaagatccaaaggtagcgcataatgtttttgaa
gcaggattgaagaggtttatgcatgaacctgggtacattctcgaatatgctgatttctta
tgtcgactgaatgatgatagaaatgtcagggctttatttgagcgggttttaagctcactt
cctgctgaggaatctgtagagatctggaaacgttttgcccaatttgaaaatacatatgga
gatttggctagcatgttaaaggttgagcagagacgaaaggaggcactttctggaacaggc
gaagagggtacatcaatgttagagggttctttgcatgatgtggtctctcgttacagtttc
atggatctttggccctgttcatccaaagacttggaccatttgtcccggcaggagtggctt
gctaagaacgttaacaggaaaattgacaaatcaaatcttgcttttggaactggttctata
gacaaaggttcttctggactgacaaccactcaaaagacaaatacctcctcaaaagttgtt
tatcctgatacttcaaagatggtggtttatgatcccatgcaaccaaatggttctggactc
atttctagtgcagtggcccctgggctcccagttctttctggttcaatggctacttcaact
gcaatcagtggtggtgggaccacaaaagcccttgatgaaattctgaaagtgatgccacca
gctttagtggcatttatagcacatttacctccagttgaagggccatctccagatgtggac
attgtcttatctattctgttgcagagcaatataccaactgttcaagcacagagtgggaaa
acaggtctgccacaacagccacagcagttgtctgcaggccctggcccaactactagtgac
ctctctgcctctggcagagctcgttctaatcagaacaattcaacttatagacagtcgagc
aaaagaaaagatctggaaaggcaagaagatgatgatactacaacagttcagagtcgccca
cttcctcgggatgtcttcaggcttcgacagcttcaaaggtccagagggagcgtcacttca
caaactggatcggcagcatcaggtggaagtgcattttcgggtgaaccgtcaggtagttct
ggatag
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