Aristolochia californica: 137956372
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Entry
137956372 CDS
T10486
Name
(GenBank) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
acak Aristolochia californica
Pathway
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137956372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acak03021
]
137956372
03019 Messenger RNA biogenesis [BR:
acak03019
]
137956372
Transcription machinery [BR:
acak03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137956372
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137956372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
137956372
NCBI-ProteinID:
XP_068659946
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MEMESSRRSIDRTREPGTKKPRLVGDAEFDRDRIFSQRASVGSAMPVVSRFKASDKERDD
SIRGAGHYQQPPHEEQDIVSQYKTALAELIFNSKPIITNLTIIAGENTQAAKGIAATICA
NILEVPSEQKLPSLYLLDSIVKNIGRDYIRHFSGRLPEVFCKAYKQVDSSIHPSMRHLFG
TWKGVFPQAALQIIEKELGFTPAINGSSAGAVTSRPDSQLQRPPHSIHVNPKYLEARQRL
QQVRAKGTNNETTGSTVTTAEESDSSAVIGSSRPWASLPVKATNIQHSQSDHPNEAAPSK
NLDAVYGGDYEYGSDFSRHSDLGIGKGRERIAVREPVDKPSRGINSANKPALGERNGLDA
PNAYRNSRDPRVQANNQRQTKFMANRSNKDASENWKNSEEEEFMWEDMNSRLIDECGTEI
SRKDCWNTEEAEKSLKNVTRGKWMPLETELLDTSRWNSHDISRLEKPSSGEEKVPLKTEI
DCFNQPRGIRSNMSGSGAESYTDTLSGGQAAFGHQTPRLWPSQDMQPSDGLKHKSLASIV
SGSVSSVPLNIGYLPSSASRSSGTPGHLQHPLRPPSPSEPSSFDQRPHSPSSAGLMDHDL
SQPPSLSQSVKRAQLVGLKRDPRIQARQESLSVAPQTQVLPLQIAKLPSSRPLQHLQSSI
PSLPSFAQQNRHLPVSQQPLVEPLNQAQNSLSKPLAIGPAQAIDCSGSEDLNQSAAALSK
SSKTSDLLAAIMKSGLVGTNLVTSGSPDPSHPESSHVNILPPHPSEPPPVQQTGSSTPSV
GTTSHGDVPPLITHASKKVQPPLPPGPPPFTSTVGSTSPTSNSSNAVPNPLSDLLSALVA
KGLISTPSTELVTQSEPQLPIQPQKQTTGLAGSSSVPVSLSVTSSTVEKSHPEPAVIATS
SSKSTSIEVKYPLGTEFRSEIVREMHLKVISSLFDDLPHQCSICGLRIDLQEELSRHLDW
HASKKQELTSCSKVSRTWFATIDDWVTGDMGPPLGPSTRLIEERASEVETCEPMVPADES
QCICALCGEPFEDWYSDARDEWMYRGTVYLPRLGDDGVMENAEKVGIIVHTHCISQSTAV
EQAAEA
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagctcgcgcagatctatagatagaacgagagaaccgggaacgaagaaa
ccaaggttggtgggggatgctgaattcgatcgcgatcgcatcttttcccagagggcatct
gtgggcagcgctatgccggtggtttcgaggttcaaggcgagcgataaggagagagatgat
tcgatccggggagctggacactatcagcagccgccgcatgaagagcaggatattgtgtcg
cagtataaaacggccctcgccgagctcatttttaattccaaaccaataatcaccaacctg
acaataattgctggggagaatacccaggcggccaagggaatcgctgctaccatctgcgcg
aatattctcgaggttcctagtgagcaaaagctgccctccctttatcttcttgatagtatt
gttaagaatattgggagagattacattcgacatttttctggcagattgcctgaggtattc
tgcaaggcctataaacaggttgattcgtctatccatcctagtatgcgtcatctttttggt
acttggaaaggagtgtttcctcaggctgcacttcaaattattgagaaagaacttggtttc
acacctgccatcaatggttcatcagcaggtgctgtgacatccaggccagattcccagtta
caacgaccaccacatagtattcatgtaaatcccaagtacctggaggctcgacagcgcctc
caacaagttagggcgaagggaacaaataacgaaactactggaagcacagttacaacggct
gaggagtctgatagttctgctgttataggtagcagtcgaccatgggctagtttgcctgtt
aaggcaacgaacattcaacattctcaaagtgatcatccaaatgaagctgctcctagtaag
aatctggatgctgtatatgggggagattatgaatatggttccgatttttctcggcattca
gacttgggaattggtaaaggccgtgagaggatcgctgtgcgagaaccagttgataaaccc
tctcgggggatcaattctgcaaataagccagcactgggtgagaggaatggtcttgatgct
ccaaatgcatacagaaatagcagggaccctcgtgtacaagccaacaatcagcggcagaca
aagtttatggcaaataggagcaacaaggatgcctctgaaaattggaagaactctgaggaa
gaagaattcatgtgggaggatatgaactctaggctcatagatgaatgtgggactgaaatt
tctaggaaagactgttggaatacagaagaagctgaaaaatcactgaaaaatgtgacaaga
ggcaaatggatgcctttagagactgaactgttagatacttctagatggaattcgcatgat
atttctagattggagaagccatccagtggtgaagaaaaagttccattgaaaacggagata
gattgctttaatcaacctcgtggcatacgaagtaacatgtctgggtcaggggctgaatct
tatacagacactctgtctggaggacaagctgcatttggtcatcaaactccacgactatgg
ccttctcaggatatgcagccttcagatggcttgaagcacaaaagcctggcttcgattgtt
tcaggatctgtgagttctgttcctttgaacataggttatctacctagttcagcgtcacga
tcaagcggaacgcctgggcatctacagcatccattgaggcctccatcaccttctgaaccg
tcatccttcgaccagcggcctcattctccatcatcagccggcttgatggatcatgacctc
tctcagccgccatccctctctcaatctgttaaaagagctcagctagtgggactaaagcgg
gatccacgcattcaagctagacaggagtctttatcagttgcgccgcaaacccaagttctg
ccattgcagattgcaaagttgccatcctcgcggccccttcaacatttacagagttcaata
ccttctttaccatcctttgctcagcaaaaccgtcatctacctgtgtcccaacagccactt
gtagaaccattaaatcaggcacagaactcgttatctaagcctctggcaataggccctgca
caagcaattgattgctctgggtcggaagatttgaaccagtctgctgcggcattatcaaaa
tcatctaagacgagtgatttattagctgctatcatgaaaagcggtctggttgggaccaat
cttgtaaccagtggctcacctgacccaagccatcctgagtcttcacatgtgaatattcta
cctcctcatcctagtgaacctcctccagttcagcagactggttcctcaacaccttcagtg
ggcacaacttctcatggtgatgtaccacctcttattacacatgcttctaaaaaagttcag
cctcctcttcctccaggcccccctcctttcacttccactgtgggttctacctcaccaaca
tcaaactcatctaatgcagtaccaaacccactatcagatcttttgagtgcattagttgca
aaaggcttaatatcaactccatccaccgaattagtaactcaaagcgagccacagctgcct
atccaaccacaaaagcaaaccacaggacttgctggaagttcctctgtcccagtttcttta
agtgtgacatcttctacagttgagaaatctcatccagagcctgctgtgattgccacatct
agttccaagtcaacatcaatagaggtgaagtatccgttaggcactgaattcaggtcagag
atcgttcgtgaaatgcatctgaaggtcattagtagtctgtttgatgatcttccacatcaa
tgcagtatttgtggtctaagaatagatcttcaagaagagctcagtagacacctggactgg
catgcttcaaagaagcaagagctaaccagttgcagcaaagtttcaaggacgtggtttgca
actatagatgattgggttactggtgatatgggaccaccattgggtccttctactaggctc
atcgaagagagagcttctgaggtagagacgtgtgagcccatggtcccagcagatgaaagc
cagtgcatttgtgctttatgtggagaaccatttgaagattggtatagtgatgcgagagat
gaatggatgtacagaggaacagtgtacttacctagactaggtgatgatggtgtcatggag
aatgcagaaaaagttggcattattgtacacactcactgtatatcacaaagtacagctgtt
gagcaagctgctgaggcataa
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integrated database retrieval system
