Aristolochia californica: 137956890
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Entry
137956890 CDS
T10486
Name
(GenBank) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137956890
09122 Translation
03013 Nucleocytoplasmic transport
137956890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137956890
03041 Spliceosome [BR:
acak03041
]
137956890
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
137956890
Spliceosome [BR:
acak03041
]
Complex C
Other components
EJC/TREX
137956890
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137956890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
137956890
NCBI-ProteinID:
XP_068660652
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MSVSLTEYKYITDVCIREWKNPSSNFKLADPVPTPRFLYELCWILVRGELPFQKCKTILD
SVEFSDKHSEAEIASVLADIISQMGQDLTMPGECRARLVNLAKSLVESALVPVRLFQERC
EEEFLWESEMVMIKAQYLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLITLFCQNCSET
SSQYLSAALISTIKSLIGHFDLDPNRVFDIVLECFELQPGNIIFLDLIPIFPKSHAAQIL
GFKFQYYQHMDVNHPVPSGLYQLATLLVKSDFIDLDSIYAHLLPKDDEAFEHYEAFSAKQ
FDEVNKIGKINLAATGKDLMDEEKQGDVTIDLFAALDMENEAVIERSSELENNQSLGLLY
GFLAVDDWYHAHILFERLYPLNPVAHIQICEALFRIIERTISSAYAVFCRMRLQGAGLSS
GFGSNGTDLKISSAVGSFIDLPKDLFQMLGAVGPYLHRDAVLLQKVCRVLRGYYLSVKEL
ISSASGAIVTEACGWTLEPRLLLKEARMRVEEALGTCLLPSLQLIPANPSVGQEIWELMS
LLPYEVRYRLYGEWEKEEERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA
NPMTVLRTIVHQIEAYKDMITPVVDAFKYLTQLEYDVLEYVVIERLVQGGREKLKDDGLN
LSDWLQSLACFWGHLCKKYPSMELRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQFTE
NMTEEQLDAMAGSETLRYQATSFGITRNNKALIKSTNRLRDSLLPKEEQNLAIPLLLLIA
QHRSMVVINADAPYIKMVSEQFDRCHGALLQYVEFLYSGVAPATAYAKLVPSLDELIHTY
HLDPEVAFLIYRPVMRLYKCSTGSEVFWPSDIGEANMSSADKESDTSCSSPTLVLDLGST
RKPIVWSDLLDTVRSILPSKAWNSLSPDLYATFWGLTLYDLYVPKQRYESEIAKQNAALK
ALEELSDNSSSAITKRKKDKEKIQELLDQLVLEHQKHKENVTSVLRRLAREKDNWLSSCP
DALKINMEFLQRCIFPRCIFSMLDAVYCAMFVHTLHSLGTPFFNTVNHIEVLISKTLQPM
ICSCTEFEAGRLGRFLCETLKMAYHWKSDESIYEKECSNMPGFAVYYRFPTGTRVTYSQF
IKVHWKWNTRITKLLIQCLESNEYMEIRNALIMLTKVSSVFPVTRKSGINLEKRVAKIKG
DEREDLKVLATGVAAALASRKSSWVSEDEFCMGQVDLKPGASPAKMVSMPNGSSISLPAG
ENVGLKSQASQSESASGVPRSKAVGVRLDRSESSALKPDSRLGKTRSETLTNGGDVQSVM
LPAKGATDENLTKVNPKMSEESEQPKPQVKRANQAVSLHKQPKQEQSKDDFKSGKSVGRS
TGGLSASTGDREILEGMQGGITNTSVTPTNSGSISGLIKSLAKITESRISAVRDAFDHSS
RPIQPPLDDSFAPKAAERQQKRGSPTLEQDRVSKSRKGDTEMKDVGDRERVLDSRLIEKP
HFADTDKSGSNDQNPNRPALERSKDKVNERYDREHERSRDRSIERHGRERSMERGQDKGP
ERNVDRHKEDRNKDDHRAKVRYTETSVERSHFDDRFHGQSLPPPPPIPPNVVPHSVNVSR
RDEETDRRVGTNRHMQRLSP
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtttcattaacggagtataaatacatcaccgacgtgtgcattcgtgaatggaaa
aatcctagtagtaatttcaagctcgcggatccagttcctactcctcgttttttatacgag
ctctgctggatattggttcgtggggaattgcctttccaaaagtgtaaaacgatcctggat
tcggttgaattttctgataaacattcagaggcagaaatagcttctgtgttggcagatatc
atttctcaaatgggacaagatcttactatgcctggagaatgccgtgcccgtcttgtcaat
ttggcgaaatcattggtggagtcagctttggttcctgtgaggctttttcaggagcgctgt
gaggaggaattcttgtgggagtctgaaatggtgatgataaaagctcaatatttaaaggct
aaagaggttcgagttaacactcggcttctgtatcagcaaacaaaattcaatcttctgagg
gaagagagtgaaggttatgctaaactgattacacttttctgtcaaaattgttcagaaact
tcatcccagtatttatcagcagctttgatcagcacaataaagtcgctaatcgggcacttt
gaccttgacccaaatcgtgtttttgacatagttttagagtgcttcgaacttcagccaggg
aacataatttttttggacctgatacctatttttcccaagtctcatgctgctcaaattctt
gggtttaagttccagtattatcagcatatggatgtgaatcatcccgtaccttctggcctt
tatcagctggcaacgctgcttgtcaaatcagattttatcgatcttgatagcatatatgct
catttactacccaaggatgatgaggcatttgagcattatgaggcattttcagcaaagcag
tttgatgaggtaaataaaattggcaaaataaatcttgctgctactggaaaagatttgatg
gacgaagaaaagcaaggagatgtgacgatagatctgtttgcagccctggatatggaaaat
gaggctgtcattgagcgttcttctgagcttgagaataaccagagcctgggtttgctctat
ggatttcttgctgtggatgactggtatcatgcacacattttgtttgaacgcctatatcct
cttaatcctgttgctcatattcaaatttgtgaggctttatttaggatcattgagagaaca
atctcttctgcttatgctgtgttttgtcgaatgcgtcttcaaggcgctgggttatcctct
ggatttggttccaatggcacagacctgaaaatctcatctgccgtgggctctttcattgat
ctccctaaagatcttttccagatgcttggtgctgtaggaccttatcttcaccgtgatgct
gtattgctgcagaaggtctgcagagtgctgagaggttactatctatctgtgaaagaactt
attagttctgcttctggtgccattgtaactgaggcgtgtggttggactcttgagcctcgt
cttcttctaaaagaggcacggatgagagttgaagaagctctgggaacatgtttactccct
tctttgcagttaataccagcaaatccttcagttggacaggagatttgggagttaatgagt
cttcttccttacgaggtgcggtaccggttgtacggtgagtgggagaaggaagaggagcgg
attccaatggttttggcagcaagacaaactgcgaagttggatactcggaggatcttaaag
cgactcgcaaaggaaaatttaaagcagctcggtcgcatggttgctaaattagctcatgct
aatccaatgacagtactgcgtacaattgttcaccagattgaagcatacaaagatatgatt
acaccagttgtagatgctttcaagtacctgacacaactggagtatgatgtattggaatat
gttgtgattgaacgtctggtacagggtggccgggagaagctaaaagatgatggtcttaat
ttgtcggattggcttcaatcacttgcttgtttctggggtcacttgtgtaagaaataccct
tcaatggaactaaggggtcttttccagtaccttgttaaccagctgaagaaggggtcagga
attgaacttgttcttcttcaggagctcatccaacaaatggcaaatgtccaattcacggaa
aacatgacagaggagcagcttgacgcaatggctgggagtgagacacttcgatatcaggct
acttcatttgggataacaagaaacaataaggcacttatcaaatctacaaacagactaagg
gactcattgcttcctaaagaagaacaaaatctggctattcctcttttattattaatagcc
cagcaccgctccatggttgtcatcaatgcagatgcaccatatattaagatggtcagtgag
cagtttgacagatgccatggtgctctgcttcagtacgtggaattcctttacagtggagta
gctcctgccacagcttatgccaaattggttccttcactcgatgaactgattcatacatac
cacctggatccagaggttgcttttttaatatataggcctgtcatgaggctttacaagtgc
tcaactgggtcagaagtgttttggccttctgacattggggaggcaaatatgtcaagtgct
gataaggagtcagatacttcatgctcgtcccctactcttgtgttggaccttggttcaaca
aggaagccaatagtatggtctgatctgcttgatactgtccgatcaatactgccttccaaa
gcctggaatagcctctctcctgatttgtatgctactttttgggggctcacactctatgat
ctctatgttccaaaacagcgttacgagtctgagattgccaaacagaatgctgctctgaag
gctctggaagaactctctgataactcgagttctgctattaccaaaaggaaaaaagataaa
gaaaaaatccaagagttgttggatcagttggtgttggaacaccagaagcacaaagaaaat
gttacttcggttcttaggagacttgctcgagagaaggataactggttaagttcttgtcca
gatgccctgaagattaacatggaattccttcagaggtgcatatttccgaggtgcattttt
agcatgctggatgcagtttactgtgcaatgtttgtgcacactctccattctctagggact
ccatttttcaacacagtcaaccacatagaggtgctcatatctaaaacattgcagcctatg
atctgcagctgcactgaatttgaggcaggtagacttggcaggttcttatgtgagacacta
aaaatggcataccattggaagagtgatgagtcaatatatgaaaaggagtgtagcaacatg
ccaggctttgctgtctactacagattcccaactggtactagggtcacttatagccagttt
attaaggtacactggaagtggaatacaagaattactaaactattgatacaatgtttggag
tcgaatgagtacatggaaatacggaatgccttgataatgctcacaaaagtttccagtgtt
tttcctgtcactcgaaaaagtgggatcaatcttgaaaaacgggttgctaagattaaaggg
gatgagagggaagatcttaaggtattggcgacaggtgttgctgctgcattagcttcacga
aagagctcttgggtgtccgaagatgaattttgcatggggcaggttgatttgaagcctgga
gcatcacctgcaaaaatggtttcaatgccaaatggttcttctatcagccttcctgctggt
gagaatgtgggcctcaagagtcaggcatcccaatcagaatcagctagtggagtaccccgt
tcaaaagctgtgggtgtgaggttagataggtctgaaagcagtgccctgaaacctgattcc
agactagggaaaacaagaagtgaaacattaaccaatggaggtgatgttcaatcagttatg
cttccagctaaaggagcaaccgatgaaaatttgaccaaggtcaaccctaagatgtctgag
gaatctgagcagccaaagcctcaggtcaaacgtgctaatcaggcagtttctcttcataaa
cagccaaagcaggagcagtctaaggatgactttaaatctggaaaatctgttggcagaagt
acaggggggcttagtgcttccactggtgaccgagagatcttggaaggtatgcaaggtgga
ataaccaacacttctgttacccctacaaatagtggaagtatctctggtttgatcaaatct
ttggctaagataactgaatcaaggatttctgctgtaagagatgcttttgatcactcatct
agacctatccaacctcctctagatgattcctttgctccaaaagctgcagaaaggcaacag
aagaggggtagtcccaccctggaacaagatagggttagcaaaagtagaaaaggggataca
gaaatgaaagatgttggagacagagagagagttctggattcacggctaattgaaaaacct
cattttgcagatactgacaaatctggaagtaatgatcaaaatcctaatagaccagcattg
gaaaggtctaaagataaagtaaatgaaagatatgacagagagcatgagaggtcaagagat
cggtcaatagagagacatggaagagaacgctccatggagagagggcaggataaagggcct
gaaaggaatgttgacaggcataaggaggaccggaataaagatgatcatagagcaaaagtt
cggtataccgaaacttcagttgaaagatcacattttgatgatcgatttcatgggcaaagt
ttgccacctccaccaccgatacctcccaatgttgtgccacattctgtcaatgttagcaga
agagatgaagaaactgatagaagggtagggaccaacagacacatgcagcgtctatctcca
tga
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