Aristolochia californica: 137957366
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Entry
137957366 CDS
T10486
Name
(GenBank) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
acak Aristolochia californica
Pathway
acak03420
Nucleotide excision repair
acak04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
137957366
09124 Replication and repair
03420 Nucleotide excision repair
137957366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acak04121
]
137957366
03400 DNA repair and recombination proteins [BR:
acak03400
]
137957366
Ubiquitin system [BR:
acak04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
137957366
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
137957366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR55
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SPT8
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
WDR54
Beta-prop_LRRK2
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
137957366
NCBI-ProteinID:
XP_068661233
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MWKEVGDREAGRISPKSFASRIRSHRLASLQLSNRKDIVTPHRGAVNSLQVDLTEGRYLL
SGASDGSAAIYDVQCPSDYDGAGLVAKHKHLFVVDKQVEYGHKYAISSAIWYPIDTGLFV
TGSFDHYINVWDTNTTQVVINFKMPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSG
AFTHTLSGHRDGVMSVDWSTSSEWVLVTGGCDGAIRFWDIRRAGSFLVLDQSQTQFGRRP
PLLEKTSMKGLETRALSSGQAPVSGRATQKKTGSGTSVKHSSVIRNQRKGLVAQRLHPGM
ITSHSRATAHYGAVTELKVTADGMYLLSAGSDSRLRLWDIESGCNTLVNFGALRLQTGKP
VQLAVSDDSSVIYVPCMTAVKAFDLWSGRTSMTFRGHYESVNCCWFSPQDQELYTGSNDR
QILVWSPSVSYSEEVDDGNRTGRVLLSDQDHWSD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaagaggtgggagatcgcgaagcgggtcgaatcagcccgaaatcttttgccagt
cgcatccgctcccatcgtcttgcttctctccagctctccaaccgtaaagacatagttact
cctcaccgaggcgccgtcaattctcttcaggttgatctgacagaagggcgatatctttta
tctggtgcatcagatggatcagctgctatatatgatgtccagtgtccatcagattatgat
ggagcaggcctggttgctaagcataaacaccttttcgttgttgacaagcaagttgaatat
ggacacaaatatgccatatcttccgcaatttggtatcctattgatacaggtctctttgtt
acgggctcatttgaccattatatcaatgtttgggacacaaataccactcaggtggtgatc
aattttaaaatgcctgggaaggtttataggacagctatgtcttccctagctacgtctcat
atgctaattgctgctggaacagaagatgttcaagtccgtctatgtgatatttcttctgga
gcttttacccacacattgtctggtcaccgagatggagtcatgagtgtagactggtctaca
tcaagtgagtgggttttggtaacagggggttgtgatggtgcaattcggttttgggacatc
cggcgtgctggcagttttcttgttctggatcagtcccaaactcaatttgggagacgacca
ccactgctagaaaaaacttctatgaagggtttggagacacgagctttgtcctcaggacag
gctcctgtgagtggaagggcaacacaaaagaaaactggttctggtactagtgtgaaacat
tcatcagtcattcggaatcaaagaaagggtttggtggcacagagactgcatccagggatg
ataaccagtcatagccgtgcaactgctcattatggtgctgtcactgagctaaaggtaact
gcagatggcatgtatctattgagtgcaggctcagattctagactgaggctgtgggatatt
gagtctggctgcaacaccttggtcaactttggggctttgaggctacaaaccggcaaacca
gtacagctggcagtttctgatgattcatctgttatttatgttccttgtatgacagctgtc
aaggcatttgatttgtggtcgggtaggacatctatgacatttcgtgggcactatgaatct
gttaactgctgctggtttagtccgcaagatcaggaattgtacaccgggagtaatgataga
caaatacttgtatggtctccatccgtttcttattctgaagaagtggatgatggtaacagg
acaggacgtgtgctactttcggatcaggatcactggagtgactga
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