Aristolochia californica: 137958904
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Entry
137958904 CDS
T10486
Name
(GenBank) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
acak Aristolochia californica
Pathway
acak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
137958904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acak03400
]
137958904
DNA repair and recombination proteins [BR:
acak03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
137958904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
137958904
NCBI-ProteinID:
XP_068662209
LinkDB
All DBs
Position
Unknown
AA seq
1310 aa
AA seq
DB search
MAPSRRLINGRSPLVNKQSQITAFFSPGKDSTPQSSVSPVQSKKTPNPNNDPVPTRTPSP
QLKQKKPLLVVGPSSNTSTQGSTPCLSAKKSYSDEVVGKRVNVFWPLDDAWYEGYVKSFD
KDSGKHLVLYNDAEEEVLDLVKEKVEFLEDATKSFRRLRRASSVCEITTPEKTNSDEERG
KEDWPLRQKTSDRAVRTVEKGTPDEDDDVDDDSMDEDWRDSVKETADADSEMEEEEMVPE
LERSNKAKRKGSRKRGMSGKEGLVAVKKSRVGAIAGKDSLNNTPVGSARRPTGPPSSADR
DAAPCIFNNILTGDVAERYNLREMEKFGFLGVKKRDANGRQPGDANYDPRTLYMPPEFLK
SLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPEK
NFAMNVEKLAKKGYRVLVVEQTETPEQLELRRREMGSKDKVVKREICAVITKGTLTDGEM
VSMNPDAAYIISLTEDWQSLEMQENRTVIGVCVADVSTSRFIVGQFEDDSERHCLSSILS
ELRPVEIVKPANMLSPETERVLLRDTRNPLVNDLVPLVEFWDAEKTINEVRNIYKKFRDH
VTEYADHEDRVLDDLGELPDVLWKLIKDGNNGKQALAAFGGCLFYVRQAFLDETLLRFGK
FEPLPCTESGFFNAIKKTHMILDSAALDNLEIFENSKNGGVSGTLYAQMDHCVTAFGKRL
LKSWLARPLYHVESIVERQDAIAGLKGLSSAIEFRKELSRLPDMERLLARLFSSCGANGR
NANKVVLYEDAAKKQLKEFVLVLRGCQTMMQACTSLGSMLDTVESTLLHELLTPGRGLPN
IFSVLKHFEDAFDWTEADQSGRIVPHKGVDLEYDSALSSISEIEFFLKKHLEEQKKVLKD
KSIKYVTVGKESFLLEVPESLQGNVPRDYELRSSKKGFFRYWTPKIKELLAELSQAEAAK
EFKLKTILQRLIGQFCEHHIKWRQLVCTTAELDVLISLSIASDYYEGPTCRPTIRGPSFL
SENAPSFSAKGLGHPVLRSDALGQGSFVPNDVTIGGEGHASFILLTGPNMGGKSTLLRQI
CLAAILAQVGADVPAESFELFPVDRIFVRMGAKDHIMSGQSTFLTELSETAAMLSSATRS
SLVALDELGRGTSTSDGQAIAQSVLEHFICKIGCRGIFSTHYHQLAVEYERDPKVVLCHM
ACRVGKEAGGIEKVTFLYRLTPGACPKSYGVNVARLAGLPNSIIRKAALKSKEFESNYGK
SGHRFGSLDLTMILQEVLGAAASMDCHGDSLANYVSALVELQERARLLLQ
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttcgcgtcgcctaattaacggtcgttcgccattagtcaataagcaaagccag
atcactgcctttttctcccctggaaaagattcaactcctcagagttctgtttcgccggtc
caatcgaagaaaactcctaaccctaacaatgatccggtccctacgcgaacaccctctcct
cagctaaagcagaagaagcctctcttggttgttggtccttcatctaacacttcaacccag
ggttccacgccgtgcctctctgcgaagaagtcttattctgacgaggtcgttgggaagaga
gtaaacgttttttggcctctagatgacgcctggtatgaaggatatgttaagtcattcgac
aaggactcaggaaaacatttggttctgtacaatgatgctgaagaggaggttctggacctc
gttaaagagaaagtcgaatttttagaagacgctacgaaaagcttccgtaggttgaggcga
gcgtcttcggtctgtgaaataacaacaccagaaaagacgaattcggacgaggaacgtggt
aaagaggactggccactgcggcaaaagacttccgatcgtgcagtcagaaccgttgagaaa
ggtaccccagacgaagatgacgatgtagatgatgactcaatggatgaagattggcgggat
agtgtgaaggagaccgcagatgcagactcagaaatggaagaagaagagatggtgccggaa
ttggagaggtccaataaagcaaaaagaaaagggagcagaaagaggggaatgtcgggaaag
gaagggttggttgctgttaagaagagtagggttggcgcaatagctggaaaggattctttg
aataacactcccgtcgggagtgcaaggagacctaccgggcctccaagtagtgcagacagg
gatgctgcaccatgcatttttaataacattttaactggagatgttgctgaacgatacaat
ttgcgtgaaatggagaagttcgggtttcttggggtaaaaaagcgagatgctaatgggaga
cagcctggcgatgctaattatgatccaagaactctttacatgccccctgaatttttgaag
agcttgacaggagggcagagacaatggtgggagttcaagtcaaagcacatggacaaggtt
ctctttttcaagatgggaaaattttatgaattgtttgaaatggatgcgcatataggggca
aaagaacttgatttgcagtatatgaagggtgaacaacctcattgtggatttcctgaaaag
aattttgcaatgaatgtggaaaaattggctaagaaggggtaccgagttcttgttgtggag
caaacagaaacaccagaacagctagagctccgccgtagagagatgggttcgaaagataag
gttgtcaaacgtgaaatatgtgcagtgatcacaaagggaaccctgacggatggtgagatg
gtatctatgaaccctgatgctgcttacataatttcattgactgaggattggcaaagtctg
gagatgcaggagaacaggacagtcataggtgtttgtgtggctgatgtttctactagcagg
tttattgttggacagtttgaagatgattcagaacgccattgtttgtcttcgatattatct
gagctaaggccagtagaaattgttaagcctgccaacatgctctcccctgaaactgagaga
gttctgctgagagatacacgtaatccattggtgaatgatttggtgccattagtagaattt
tgggatgctgaaaagactattaatgaggttagaaatatttataagaaattcagagatcac
gtgacagagtatgcagatcatgaagatagagtgcttgatgatttaggagaactgccagat
gttttatggaagctgattaaggatggaaataatggaaagcaagcacttgctgcttttgga
ggatgcctcttttatgtacgacaggcatttctggatgagacattgcttagatttggcaag
tttgagccactcccttgtactgagtcaggattcttcaatgcgattaaaaaaacgcacatg
attcttgattcagctgccttagacaaccttgagatttttgagaacagcaagaatggaggt
gtatcggggacactatacgcacaaatggatcattgtgtgactgcatttgggaaaaggtta
ctcaaaagttggcttgcaaggcctctttatcacgtggagtcaattgtggaacgccaagat
gccattgctggtttgaaaggtctgtcttctgctattgagtttcgaaaagagctatctagg
cttccagacatggaacgtttacttgcccgccttttttctagctgtggggccaatggacga
aatgccaataaagtagttctttatgaggatgcagcaaagaagcagcttaaagagttcgtt
ttggttcttcgtggttgtcagacaatgatgcaggcatgtacttctcttgggtccatgtta
gatactgttgagtcaaccttactccatgagctgctaaccccaggcagaggccttccaaac
attttttcagttttgaagcattttgaggatgcttttgattggactgaagccgatcagtct
ggacgtattgtaccacacaaaggggttgatttagaatatgactctgccttgtcatcaata
tcagagattgaattttttctgaagaaacacctggaggaacaaaagaaagtgcttaaagat
aagtcgatcaaatatgttacagttggaaaggaatccttccttcttgaagtaccagagagt
ttgcagggaaatgttcctcgagattatgagttacgatcatccaaaaagggattctttagg
tattggactccgaaaattaaggagttgttggcagagctctctcaggctgaagctgctaaa
gaatttaaactgaaaacaattctgcagaggctgattgggcagttctgtgagcatcacatc
aagtggagacagttggtttgtacaactgcagagctcgatgtgttgattagtttatcaatt
gctagtgactactatgaagggcctacttgccgcccaaccatcagagggccgtcttttttg
tcagaaaatgcaccatcgttttcagcgaagggtttaggacatcctgtgctcagaagtgat
gctttgggccagggttcatttgttcctaatgatgtgactattggtggtgaggggcatgcc
agctttatccttcttacaggacccaacatgggggggaaatcaactcttctccgtcaaatc
tgtttggctgcaattttggcacaggttggagctgatgttcctgctgagagctttgaattg
ttcccagtggaccgaatatttgttcgcatgggtgccaaagatcatattatgagtggtcaa
agcaccttcctcacagaactctctgagacagcagctatgctgtcctcagcaacccgaagt
tcgttggtggcactcgatgaacttggacggggcacatcaacttcggatggacaagctata
gcgcaatcagttctggaacatttcatctgcaaaatcggatgtcggggcatattctccact
cactatcaccagttagctgtagagtatgagagagatcccaaggttgtgctgtgccatatg
gcatgtcgtgttggaaaagaagctggaggcattgaaaaagtcacatttctttataggttg
acacctggtgcatgccctaagagctatggagttaatgttgcacgtttggcaggacttccc
aactccataatccgaaaagctgcattgaagtcaaaagaatttgagtcaaattatggtaaa
agtggccatagatttggaagtttagatttaaccatgattctccaagaggtactaggagct
gcagcatccatggactgccatggtgactctcttgccaattatgtaagcgcattggttgaa
cttcaggaaagagccagattgcttttacagtga
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