Aristolochia californica: 137963852
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Entry
137963852 CDS
T10486
Name
(GenBank) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
acak Aristolochia californica
Pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137963852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acak03041
]
137963852
Spliceosome [BR:
acak03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137963852
Complex C
U5 SnRNP specific factors
137963852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
137963852
NCBI-ProteinID:
XP_068667172
LinkDB
All DBs
Position
Unknown
AA seq
2373 aa
AA seq
DB search
MWNNNGGAEMWNNNGGAEMWNSGGAGVGPSSSSSQMAPPGTGGPSVPPPPTMLPSYSIPL
SPAEAEARLEERARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKY
RHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYL
AQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIHLELDEEEDS
AVYNWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMES
FFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNN
RPRKVKLGIYHTPMIMYVKTEDPDLPAFYYDPIIHPILAASKKKVYEDEDEDDFVLPDEV
DPLLQNTQLYTDTTAAGVSLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVR
VSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNML
NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQF
RLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKG
PGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLE
LRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVK
SKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPE
EAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREEL
GLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQ
YLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKF
FEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYY
GLVLDLLLLGLTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHE
EARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRS
ITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKE
RTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQE
LLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYS
QQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRL
TLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGK
LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQR
SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQ
KVHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPS
LVAESKDDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVM
IGLDLAYNLHSAFGNWFPGSKPLLAKAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPY
LSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVI
HTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNI
VIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRA
LHVNNEKAKMLLKPSKSVITEPHHIWPSLNDDQWMRVEVALRDLILSDYAKKNNVNTSAL
TQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPY
EQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICVADLRT
QIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPAALPEHEFLNDLEPLGWMHTQP
NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRINK
DTGSNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMRYGVKLGTAR
DYYHEDHRPTHFLEFSNLEEGDHAEGDREDTFS
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacggcggagcggagatgtggaacaacaacggcggggcagagatgtgg
aacagcggtggagctggagtcggtccctcttcttcttcttctcagatggcccctccgggt
accggtggcccgtcagttccaccgcctccgacgatgctgccatcttatagcatcccgctc
tcaccggccgaggcggaggcgcggctggaggagagggcccgcaagtggatgcagcttaat
tccaagcgttatggagacaaacgcaagttcggtttcgttgagacgcagaaggaggacatg
ccccctgagcatgtcaggaagatcattagggatcatggcgacatgtcatctaagaaatat
cgacatgacaaacgtgtgtatcttggagcgcttaagttcgtcccacatgctgtatacaaa
cttctcgagaatatgcctatgccgtgggagcaggtccgcgatgtgaaaattttgtatcat
attactggagcaattacatttgtcaatgaaataccctgggttgtggagcctatatattta
gctcagtggggaaccatgtggataatgatgagaagggagaaaagggaccgacgtcacttt
aaacgcatgcggtttccaccttttgatgatgaggaacctccacttgactatgctgataat
ctactggatgtggatccattggagccaatacacctagaactagatgaagaagaagattct
gcagtttataattggttctatgaccacaagcctcttgtgaagacaaagcttatcaatggc
cctagttacaggaaatggcatctgtcacttcccataatggcaactcttcatcggctggcg
gggcagttattgtctgatttgatcgaccgtaactatttttatttgtttgatatggagtcg
ttcttcactgcaaaagcattgaacatgtgtataccaggagggcctaagtttgagcctttg
tatcgtgatatggagaagggcgacgaggactggaatgagttcaatgatataaataaactt
atcatccgatcccctctgcggacagagtaccgaattgcatttcctcatctttacaacaat
aggcctaggaaagtaaaacttggaatatatcatactccaatgatcatgtatgtaaaaact
gaggatcctgatttacctgcattttactatgatcctattatacacccaatactggctgct
agcaagaagaaagtatacgaagatgaggatgaagatgattttgtactaccagatgaagta
gacccattactccaaaacactcaactgtatactgatacgacagctgctggtgtttcactc
ttatttgctccacgacctttcaatatgaggtctggtcgaatgcgacgggcagaagatatc
cctcttgtatcagaatggtacaaggaacactgtcctccatcatatccagtcaaagttcgt
gtcagctatcagaagctgttaaagtgttttgttctcaatgaactccaccaccgacctcca
aaggcacaaaagaagaaacacttattccggtcgcttcaggctactaagttctttcagact
acagaacttgactgggctgaagccggacttcaagtttgtaagcaggggtacaacatgcta
aatctattgattcaccgaaaaaatttgaactatcttcaccttgactacaatttcaacttg
aagcccgtaaaaaccctcaccacaaaggaacgcaagaaatcacgttttggtaatgctttc
catctgtgtcgtgaaattttgcggttgactaagcttgttgtggatgccaacattcagttc
cgtttgggaaatgttgatgccttccagttggcagatgggctccagtatacattctctcat
gttggtcagttgactggcatgtatagatacaaatataggttaatgagacagatcagaatg
tgtaaagatttgaaacatttgatttattaccgcttcaatactgggcctgttggaaaggga
cctggttgtggcttttgggctccaatgtggagggtgtggttatttttccttcgtgggatt
gtgccattgctggaaaggtggttgggaaatttacttgcacgccaatttgaagggcgccac
tctaaaggagttgcgaagacggtcactaagcagcgtgtagaaagtcattttgatttggag
ctccgagctgctgtgatgcatgatgttcttgatgcaatgccagagggaatcaagcagaac
aaagccagaaccattttgcagcatcttagtgaagcatggcgctgttggaaagcaaacatc
ccttggaaggtgcctggcttgccagtccccattgagaacatgattcttcggtatgtgaag
tcaaaggcagattggtggacaaatgttgctcattacaaccgtgaacgtataagaagaggt
gcaacagttgataaaacagtttgtcggaagaatcttggaagattgacacgattatggtta
aaggctgagcaagaacgacaacacaattatttgaaggatggtccatatgtcaccccggag
gaagcagtggctatttatacaactactgtgcattggctggagtctaggaagttctctcca
attccatttccaccgttgtcgtacaagcatgataccaaacttcttatccttgcacttgag
aggctgaaggaatcttacagtgttgcagtacgattgaaccaactacaaagggaggagttg
ggacttattgaacaggcatatgataatccacatgaggcgttgtcacgaataaaacgtcat
ttgctcacacagcgcgcttttaaggaggttggtattgagtttatggatctttatagttat
ctgatccctgtttatgaaattgagccactggagaaaatcacagatgcataccttgatcag
tatctctggtatgaaggtgacaagcgccatctctttcccaattggattaaaccggcagat
tcagagccaccgcctctgttggtttataaatggtgtcaaggtataaacaatttacagggc
atttgggacactagtgatggacagtgtgttgtaatgcttcaaaccaagtttgaaaaattc
tttgaaaagattgacttaacaatgcttaacaggttacttcgtctggttcttgatcacaac
attgctgactatgtcaccgcaaaaaacaatgtggtgctgtcttacaaggatatgagccac
acaaactcatatggtttaattcgtggcctccagtttgcttcatttgtggtgcaatattat
gggttggtgttggatctgttgctgctagggttgactcgtgcaagtgagattgctggccca
ccacagatgcctaatgaatttattacttattgggacactaaagttgaaacaaggcatccc
attcggttatattctcgttatattgacagagtgcacattctgttccgtttcactcatgag
gaggctcgagaccttattcagcgctatttaactgaacatcctgatccaaacaacgagaat
atggttggatataataataagaagtgttggcctcgggatgcacggatgaggctcatgaaa
catgatgtcaaccttgggcgaagtgttttctgggacatgaaaaacaggcttccgcgaagt
atcacgactttggagtgggaaaacagttttgtctccgtatacagcaaggacaatcccaac
ttacttttcagcatgtgtggattcgaagtacggatactgccaaagataagaatgactcaa
gaagctttcagcaacacaaaggatggagtttggaacttgcagaatgaacaaactaaagag
cgtacagcaattgctttcttgcgtgttgatgatgagcacatgaaggtttttgaaaatcgt
gtgaggcaaattcttatgtcatcaggatcgacgacatttacaaagattgtaaacaaatgg
aatacagctcttataggtcttatgacatatttccgtgaggcaactgtacatacacaagag
ctgttagatttgcttgtaaagtgtgaaaataaaattcaaacccgtattaagattggtttg
aattcaaagatgcctagcaggttcccgcctgttattttttataccccaaaggaaattgga
ggccttggcatgctatccatgggtcacatactgattccacaaagtgatctgcggtatagt
caacaaaccgatgtaggcgtcacacatttcaggagtggaatgagtcatgaagaggatcaa
ctaataccaaatctttatcgctacattcagccatgggagagtgagttcatagactctcag
cgtgtttgggctgaatatgcattgaagaggcaggaggcacagtcacaaaatcgtcgttta
acccttgaggatctagaggattcctgggatagagggataccaagaatcaacactcttttc
cagaaagatcggcatactttggcatatgataaggggtggcgagtgcgcactgatttcaag
caatatcaagttctgaagcagaacccgttttggtggacacatcaacgacatgacggaaaa
ctttggaacttgaataattaccggactgatgtcatccaggcacttgggggggttgagggc
atacttgaacacacgctatttaaaggaacatactttccgacttgggagggtcttttttgg
gaaaaggcatcgggttttgaagagtcaatgaaatacaagaagctgacaaatgctcagaga
tctggtctcaaccagatccctaaccgaaggttcacgctttggtggtcccctacaatcaac
cgtgccaatgtctatgttggcttccaagtgcagttggatctgacagggatatttatgcat
ggaaagattccaaccttgaaaatatctttgattcagatttttagagcccatctatggcag
aaagtccatgagagtgttgtcatggatctctgtcaagttttggatcaggaattggatgct
ttagaaattgagactgtgcagaaagaaacaatacatccaaggaagagttacaagatgaat
agctcttgtgctgatgttcttctttttgctgcacatagatggccgatgtctaagcccagt
ttagtggcagagtcaaaggatgatgtgtttgatcaaaaagccagcaacaagtattggata
gatgtgcagctccgttggggagattatgattctcatgatatagaacggtacaccagggcc
aaattcatggattatacaactgataacatgtctatctacccatctccaactggggttatg
atcggattagatttggcgtacaacttgcattctgccttcggtaactggtttcctggctca
aaacctctactggctaaagctatgaataagatcatgaaatcaaatcctgctttatatgtt
ctgagggaacgcatcagaaagggtctgcagttgtattcatctgagcctacggagccatac
ctttcgtctcagaactatggggagatcttcagtaaccaaatcatctggtttgttgatgac
acaaatgtgtatcgtgtcacaattcacaaaacatttgaaggaaatctcacaacaaaaccc
atcaatggtgccatctttatatttaatccacgaactggacagctatttttgaaggttatt
cacacaagcgtgtgggctggacagaagcgtcttggccagcttgccaaatggaaaacagct
gaagaagtagctgctctagttagatcattgcctgttgaagaacagcctaagcaaatcatt
gtgacacgtaaaggaatgttggatcctctggaggtccatttactggattttcctaacatt
gttatcaagggaagtgaactgcaattaccattccaggcttgcttgaaaattgagaaattt
ggggacttgattctgaaggccaccgaaccacagatggttctttttaatatttatgatgat
tggttgaagagtatttcatcatacactgccttctctcgtctcattttgatcttacgtgct
ctacatgtgaacaatgagaaggctaaaatgttactaaagcctagtaaatcagtcatcaca
gaaccgcatcacatctggccttcactcaacgatgatcagtggatgagggttgaggttgct
ctaagggatcttatactttcggattatgcaaaaaagaataatgttaacacttcagcactg
acccaatctgagatccgtgatatcatacttggggcagagattactccaccctcacagcag
aggcaacagattgcagaaattgagaaacaggctaaggaagcaagccaacttactgcagtt
acaacaaggacaacaaatgttcatggcgatgagctcattgttaccaccactagcccatat
gagcaggccgcctttgggtccaagactgattggcgtgtgcgagcaatatctgcaacaaat
ctatatcttcgagtcaaccatatttatgtgaattcagaggatattaaggagactggctat
acgtacatcatgcccaagaacatattgaagaagttcatttgtgtagcagaccttcggact
caaattgcaggctacctatatggtgtaagtccccctgacaatcctcaagtcaaggaaatt
aggtgtatagccatgccgccacaatggggaactcatcagcaggtccaccttcctgctgct
cttcctgagcatgaattcttgaacgaccttgagcctttgggttggatgcatacacaacca
aatgagcttccccaattgtcacctcaggatcttacctcacatgctcgcattctggagaat
aacaagcaatgggatggtgagaagtgcattattcttacttgcagttttactcctggctct
tgttccttgactgcctataagctcaccccaaccggttatgaatggggtcggatcaataaa
gatacaggaagcaacccacatggctatcttccaacccattatgagaaggttcagatgctt
ctcagtgaccgcttccttgggttttacatgattccagataatggtccttggaactataac
ttcatgggggtgaagcacaccgtgagcatgaggtatggtgtaaagcttgggacagcaaga
gactactatcatgaggatcatcgacctacccattttctggaattcagtaacttggaagag
ggcgatcatgcagagggagatcgggaggatactttctcatag
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integrated database retrieval system
