Aristolochia californica: 137965181
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Entry
137965181 CDS
T10486
Name
(GenBank) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
acak Aristolochia californica
Pathway
acak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137965181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acak03041
]
137965181
Spliceosome [BR:
acak03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137965181
Complex C
U5 SnRNP specific factors
137965181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
137965181
NCBI-ProteinID:
XP_068667676
LinkDB
All DBs
Position
Unknown
AA seq
2363 aa
AA seq
DB search
MWNNNVGPEMWNSGGAGLGPSSSSQMAPPGTTGSSVPPPPAMQPSYSVPLSPAEVEARLE
ERARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGA
LKFVPHAVYKLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMM
RREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIHLELDEEEDSAVCNWFYDHK
PLVKTKLINGPSYRNWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMC
IPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGVY
HTPMIMYVKTEDPDLPAFYYDPIIHPIPSASKKKVSEDEDEDDFEVPDGVDTLLQSTQLY
TDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCF
VLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLN
YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQL
ADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMW
RVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVL
DAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVA
HYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTV
HWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNP
HEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRH
LFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLN
RLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLG
LTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYL
TEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSF
VSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVD
DEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCEN
KIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHF
RSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWD
RGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTD
VIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRR
FTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDL
CQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDDVF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLH
SAFGNWFPGSKPLLAKAINKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKM
LLKPSKSVITEPHHIWPSLNDDQWMRVEVALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEITPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTD
WRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICMADLRTQIAGYLYGIS
PPDNPQVKEIRCIGMPPQWGTHQQVHLPAALPEHEFLNDLEPLGWMHTQPNELPQLSPQD
LTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRINKDTGSNPHGYL
PTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMRYGVKLGTPRDYYHEDHRPT
HFLEFSNLEEGDHAEGDREDTFS
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgtcgggccagagatgtggaacagcggtggagccggactcggtccc
tcttcttcttctcagatggcacctccaggtaccactggctcgtcagttccaccgcctccg
gcgatgcagccctcttacagcgtcccgctctcaccggctgaggtggaggcgcggctggag
gaaagggcccgcaagtggatgcagcttaattccaagcgttatggagacaaacgcaagttt
ggtttcgttgagacgcagaaggaggacatgccccccgaacacgtcagaaagatcattagg
gatcacggggacatgtcatctaaaaaatatcgacatgacaaacgtgtctatcttggagca
cttaagttcgttccacatgctgtctacaaactactcgagaacatgcctatgccatgggag
caggttcgtgatgtgaaaattttgtatcatattactggagcaattacatttgtcaatgaa
ataccgtgggttgttgagcctatatacttagctcagtggggaaccatgtggataatgatg
agaagggagaaaagggaccgtcgtcactttaaacgcatgcggtttccaccctttgatgat
gaggaacctccacttgactatgcggataatttacttgatgtggatccattggagccaata
cacctagaactagacgaagaagaagattctgctgtttgtaattggttctatgaccacaag
cctcttgtgaagacaaagcttatcaatggccctagttacaggaattggcatctctcactt
cccataatggcaactcttcatcggctagcagggcagttattgtctgacttgattgaccgt
aactatttttatttgtttgatatggagtcattcttcactgcaaaagcattgaacatgtgc
ataccaggagggcctaagtttgagcctttgtatcgtgatatggagaagggtgatgaggac
tggaatgagttcaatgatatcaacaaacttatcatccgatcccctctccggacagagtac
cggattgcatttccccatctttacaacaacaggcctaggaaagtaagacttggagtatac
catactccaatgatcatgtatgtaaaaactgaggatcctgatttacctgcattttactat
gatcctattatacacccaataccatctgctagcaagaaaaaagtatctgaagatgaggat
gaagatgattttgaagtacctgatggagtggacacattgctgcaaagcactcaactttat
actgatactacagctgcaggtatttcactcttatttgctccaaggcctttcaatatgaga
tctggtcgaatgcgccgagcagaagatatccctcttgtatcagaatggtacaaggagcac
tgtcctccatcatatccggtcaaagtccgtgtcagctatcagaaactgttaaagtgtttt
gttctcaatgaacttcaccaccgacctccaaaggcgcaaaagaagaaacacttattccgg
tcgctccaggctactaagttctttcagacaactgaacttgactgggctgaagctggactt
caagtttgtaagcaggggtacaacatgctaaatctattgattcaccgaaaaaatttgaac
tatcttcaccttgactacaatttcaacttgaagcccgtaaaaacccttaccacaaaggaa
cgcaagaaatcacgttttggtaatgctttccatctgtgtcgtgaaatactaaggttgact
aagcttgttgtggatgccaatattcagttccgtttgggaaatgttgatgccttccagttg
gcagatgggctccagtatacattctcccatgttggtcagttaactggcatgtatagatac
aaatataggttaatgaggcagatcagaatgtgtaaagatttgaaacatctgatttattac
cgcttcaatactgggcctgttggaaagggacctggttgtggcttttgggctccaatgtgg
agggtgtggttgtttttccttcgtgggattgtgccattgctggaaagatggttgggaaat
ttacttgcacgccaatttgaagggcggcactctaaaggagttgctaagacagtcaccaag
cagcgtgtagaaagtcattttgacttggagcttcgagctgctgtgatgcatgatgttctt
gatgcaatgccagagggaataaagcagaacaaagccagaaccattttgcagcatcttagt
gaagcatggcgctgttggaaagcaaacatcccttggaaggtgcctggcttgccagtcccc
atcgagaacatgattcttaggtatgtgaaatcaaaggcagattggtggacaaatgttgct
cattacaaccgagaacgcattagaagaggtgccacagttgataaaacagtatgccgaaag
aatcttggaagattgacaagattatggttaaaggctgagcaagaacgacaacacaattat
ttgaaggatggtccatatgtcaccccagaggaagcagtggctatttatacaaccactgtg
cattggctggagtctaggaagttctcaccaatcccatttccacctttgtcgtacaagcat
gataccaaacttcttatccttgcacttgagaggctgaaggaatcatacagtgttgcggta
cgattgaaccaactacagagggaagagttaggacttatcgaacaggcatatgataaccca
catgaggcgttgtcacgaataaaacgtcatttgctcacacagcgtgcttttaaggaggtc
ggtattgagtttatggatctgtacagttatctgatccctgtgtatgaaatcgagccactg
gagaaaatcaccgatgcataccttgatcagtatctgtggtatgaaggtgacaagcgccat
ctctttcccaactggattaaaccagcagattcagagccaccgcctctactggtttataaa
tggtgtcaaggcataaacaatttacagggcatttgggacactagtgaagggcagtgcgtt
gtaatgcttcaaaccaagtttgagaaattctttgaaaagattgacttaacaatgcttaac
aggttactgcgtctggttcttgaccacaacattgcggactatgtcactgcaaaaaacaat
gtggtgctatcttacaaggacatgagccacacaaactcatatggtctaattcgtggtctc
cagtttgcgtcgtttgtggtgcaatattatggcttggtgttggatctgttgctgctgggg
ttgacacgtgcaagtgagattgcaggcccaccgcagatgcctaatgaatttattacttac
tgggacactaaagttgaaacaaggcatcccattcggttatattctcgttatattgacaaa
gtgcacattctgttccgtttcactcatgaggaggctcgagaccttatacagcgctatcta
actgagcatcctgatccaaataatgaaaatatggttggatataataataagaagtgctgg
cctcgagatgcacggatgaggctcatgaaacatgatgtcaacctagggcgaagtgttttc
tgggacatgaaaaacaggctaccacgaagtatcacgactttggagtgggaaaacagtttt
gtctctgtatacagcaaggacaatcccaacttacttttcagcatgtgtggcttcgaagta
cggatactgccaaagataagaatgactcaagaagcatttagcaacacaaaggatggagtt
tggaacttgcagaatgaacaaactaaagagcgtacagcaattgctttcttacgtgttgat
gatgagcatatgaaggtgtttgaaaaccgtgtgaggcaaattcttatgtcatcaggatcg
acgacatttacaaaaattgtcaacaaatggaatacagctcttataggtcttatgacatat
ttccgtgaggcaactgtacatacccaggagctgctagatttgcttgtaaagtgtgaaaac
aaaattcaaacccgtattaagattggtttgaactcaaagatgcctagcaggttcccacct
gttatcttttacaccccaaaggaaattggaggccttggcatgctatccatgggtcacata
ctgattccacaaagtgatttgcggtatagtcaacagacagatgtaggtgtcacacatttc
aggagtggaatgagtcatgaagaggatcaactaataccaaatctttatcgctacattcag
ccatgggagagtgagttcattgattctcagcgtgtttgggctgaatatgcattgaagagg
caggaagcacagtcacaaaataggcggttaacccttgaggatctagaggattcctgggat
agagggataccaagaatcaacactcttttccagaaagaccggcatactttggcatatgat
aaggggtggcgagtgcgtactgatttcaagcagtatcaagttctgaagcagaacccattt
tggtggacacatcagcggcatgacggtaagctttggaacttgaataattatcgaactgat
gtcatccaggcacttggaggagtcgaggggatccttgaacacacactatttaaaggaaca
tactttcctacttgggagggtcttttctgggaaaaggcatcaggttttgaggagtcaatg
aagtataagaaactgacaaatgcgcagagatctggtctcaaccagatccctaatcgtagg
ttcacgctttggtggtctcctacaatcaaccgtgcaaatgtctatgttggtttccaagtg
cagttggatctgactgggatatttatgcatggaaagattccaaccttgaaaatatctttg
attcagattttcagagcccatctgtggcagaaagtccatgagagtgttgtcatggatctc
tgtcaagttttggatcaggaattggatgctttagaaattgagactgtacagaaagaaaca
atacatccaaggaagagttacaagatgaatagctcttgtgctgatgttcttctttttgct
gcacatagatggccaatgtctaagcccagtctagtggcagagtcaaaagatgatgtgttt
gaccaaaaagccagcaacaagtattggatagatgtgcagcttcgttggggagattatgat
tctcatgatatagagcggtacacaagagcgaaatttatggattatacaactgataacatg
tctatttacccttctccaactggggttatgattggattagatcttgcgtacaacttgcat
tctgcctttggcaactggtttcctggctcaaaacctctgctagctaaagctatcaataag
atcatgaaatcaaatcctgctctgtatgttctgagggagcgaatcagaaagggtctgcag
ttgtattcatctgagcctaccgagccatacctttcctctcagaattacggggagatcttc
agcaaccaaatcatctggtttgttgatgatacaaatgtgtatcgtgtcacaattcacaaa
acatttgagggaaatctcacaacaaaacccatcaatggtgccatctttatattcaatcca
cgaactggacagctatttttgaaggttattcacacaagtgtatgggctggacagaagcgt
cttggccagcttgccaaatggaaaacagctgaagaagtagctgctctagttagatcattg
cctgttgaagaacagcccaagcaaatcattgtgacacgtaaaggaatgttggatcctcta
gaggtccatttacttgattttccaaacattgttatcaagggaagtgagctgcaattacca
ttccaggcttgcttgaaaattgagaaatttggggacttgattctgaaggccacagaacca
cagatggttcttttcaatatttatgatgattggttgaagagcatctcatcatacactgct
ttctctcgtctcattttgatcttgcgagctctacatgtgaacaacgagaaggctaaaatg
ttactaaagcctagtaaatcagtcatcacggagccacatcacatctggccttctctcaat
gatgatcagtggatgagggttgaggttgctcttagggatcttatactttcagattatgca
aaaaaaaataatgttaacacttcggcactgacccaatctgagatccgtgatatcatactt
ggggcagagataactccaccttcacagcagaggcaacagattgcagaaattgagaaacag
gcaaaggaagcaagccaactcactgcagttactacaaggacaacaaatgttcacggtgat
gagctcattgttaccaccactagtccatacgagcaggcagcctttgggtccaagactgat
tggcgagtgagggcaatatctgcaacgaatctgtatcttcgagtcaaccatatttatgtg
aattcagaggatattaaggagactggctatacatacatcatgcccaagaacatattgaag
aagttcatttgtatggcagatcttcggactcaaattgcaggctacctatatggtataagt
ccacctgacaatccccaagtcaaggaaattaggtgtataggcatgccaccacaatgggga
actcatcagcaggtccatcttcctgctgctcttccagagcatgaattcttgaacgacctt
gagcctttgggttggatgcatacacaaccaaatgagcttcctcagttgtcacctcaggat
cttacctcacatgctcgcattttggagaacaacaagcagtgggatggtgagaagtgcatc
attcttacttgcagtttcacacctggttcttgttccctcactgcctataagcttacccca
actggttatgaatggggtcggatcaataaggatacaggaagcaacccacatggctatctt
ccaacccattacgagaaggttcagatgctcctgagtgaccgcttccttgggttctacatg
attcctgataatggtccttggaattataacttcatgggggtgaaacacaccgtgagcatg
aggtatggtgtaaagcttgggacaccacgagactactatcatgaggatcatcggcctact
cattttctggaattcagtaacttggaagagggtgatcatgccgagggagatcgggaggat
acgttctcatag
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integrated database retrieval system
