Aristolochia californica: 137965707
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Entry
137965707 CDS
T10486
Name
(GenBank) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
acak Aristolochia californica
Pathway
acak04120
Ubiquitin mediated proteolysis
acak04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
137965707
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
137965707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acak04121
]
137965707
Enzymes [BR:
acak01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137965707
Ubiquitin system [BR:
acak04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
137965707
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
137965707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
zf-C3HC4_2
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
zf-C3HC4
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_like
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
U-box
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_SCAP
zf-RING_5
TRAF_BTBD17
zf-RING_10
Baculo_p24
STL11_N
Prok-RING_4
zf-Nse
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
137965707
NCBI-ProteinID:
XP_068668126
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MAETSSTGALVPSVKPEPKWGAEAVTLSVTQAAGGEGATVAGEVWGVGVEPDKDLLCPIC
MQIIKDAFLTACGHTFCYMCIVTHLNNKSDCPCCGQYLTTNQLYPNFLLNKLLKKQSARQ
IAKHASPTEHLRLALQQGFEVSVKELDNILSLLQEKKRKTEQEEAETNMQILLDFLLCLK
KQKLDELNEVQSDLRYIKEDINSVERHRIELYHAKERYSVKLRMLADDPMAPKVRSSSLD
KHNTGFIAGTRAVQGGTCSNSSQGKKIDTKVQGNSQGYQRKDGLSGSDPQNAISQSGLAV
ARKRRVHAQQFNDLQEYYLQMRRQGACQSKNQDERDVNGLSREGYHAGLEDFQSVLTTFT
RYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSTVVNEPADVH
LPVVEMQTRSKLSCLSWNKSIKNHIASSDYEGIVTVWDVSTRQSVMEYDEHEKRAWSVDF
SPTDPSLLVSGSDDCKVKIWCTKQEASVLNIDMKANICCVKYNPGSSIYVAVGSADHHIH
YYDLRNTSAPVHIFSGHRKAVSYVKFLSSNELASASTDSTLRLWDVKEHCPVRTYRGHTN
EKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAWHKFGCSDMDDTDDDAGSYFISAVC
WKRDSPTILTANSQGTIKVLVLAA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacctcttcgacgggggcgttagtgccgtcggtgaagccggaacccaaatgg
ggtgcggaggcggtgactttgtcggtgacgcaggccgctggaggggagggggctacggta
gccggggaggtgtggggggtgggagtggagccagataaggatttgttgtgtcccatctgt
atgcagattatcaaggacgcattcctcaccgcctgtggtcatactttctgttacatgtgt
attgttacccatctgaataacaagagtgattgcccctgttgcgggcagtacctcactact
aatcagctttaccctaattttctgcttaataagctactgaagaagcaatccgctcgtcaa
atagcaaaacatgcatcacctacagagcatcttcgtctggcattacaacagggttttgaa
gtttctgtgaaggagctggataacatactttctctccttcaagagaaaaagaggaaaacg
gagcaagaagaggctgagaccaatatgcagattcttcttgacttcttgctctgcttgaag
aaacaaaaacttgatgaactaaatgaggtacaatctgatctccgatatattaaagaagat
ataaactctgtggagaggcacagaattgagttataccatgcaaaggagagatactcagtg
aaacttcgcatgctagcagatgaccccatggcaccaaaagtacggtcttcttcacttgat
aagcacaatacaggcttcattgctggtactcgggctgtacaaggtggcacctgctcaaac
agttcccagggaaagaaaatagacacaaaggtccaaggaaattcccagggctaccaaaga
aaagatggtcttagtggttcagatccacagaatgcaatttctcagtcaggactggctgta
gcaagaaaaaggagagttcatgcacagcagtttaatgatttacaagagtattacttgcaa
atgaggcgtcaaggagcttgccaatcaaaaaatcaggatgaaagggatgttaatggttta
agccgggaaggataccatgcaggtcttgaggattttcagtctgtactgactacatttact
cgatacagtcgcttgcgtgttattgctgaacttagacatggggatcttttccactcagcc
aatattgtatcaagcatagaatttgatcgtgatgacgagttatttgctactgctggggtt
tctaggcgtattaaagtttttgagttctctacggtggtaaatgaacctgctgatgtccac
ttgccagtggtggagatgcagacacgatccaaactcagttgcttgagttggaataaatcc
attaagaaccatatagcaagtagtgattatgaagggatagttaccgtgtgggatgtatcc
accaggcagagtgtcatggaatatgatgagcatgagaaaagagcatggagtgttgatttt
tcgcctactgatccatcattgctggtatctggtagtgatgattgtaaggtcaaaatttgg
tgcaccaaacaagaagccagtgtattaaacattgatatgaaagctaatatttgttgcgtt
aagtataatccaggttctagtatttatgtggcggttggttctgctgatcatcacattcat
tattatgacctgagaaatacaagtgctccggtccatatctttagtggtcacaggaaggca
gtttcatatgtaaaatttctctcaagtaatgagcttgcctctgcatcaactgatagtaca
ttgcgattatgggatgtgaaggaacactgtccggttcgaacatatagaggacacacaaat
gagaagaattttgtgggtctaacagtaaataatgagtatattgcctgtgggagtgaaaca
aatgaagtttttgtgtaccacaaggctatctccaaacctgcagcttggcataaatttgga
tgctctgatatggatgatacagatgatgatgcgggttcatacttcataagtgcagtgtgt
tggaaaagagatagtccaacaatattaactgctaatagtcaaggaaccatcaaagttctc
gtacttgctgcttga
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