Aristolochia californica: 137967140
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Entry
137967140 CDS
T10486
Name
(GenBank) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137967140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137967140
03012 Translation factors [BR:
acak03012
]
137967140
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137967140
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137967140
Translation factors [BR:
acak03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137967140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
137967140
NCBI-ProteinID:
XP_068669692
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MHFGLGFVLRIGKTTMALPVRRSPSYRGCISIFQRFWFLTCEYTGGGRAVGQSNSAIGRR
SFCSYAVEQFSDDEYECEFESQQASSSVANIDEWRWKLSLLLRNEEEHEIISRDKRDRRD
YEQISNLAKGMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQ
EHLDRMQLISGKVENVDNAGVSQTEIATLEEDQDFLLDESVMERILQRKSIRMRNLQRSW
QESPEGMKLLDFRKSLPAYKEKERLLSAIARNQVVVISGETGCGKTTQLPQYILESEVES
GRGAFCSIICTQPRRISAMAVAERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGI
LLRRLLTDRNLNGITHVFVDEIHERGMNEDFLLIILKDLLPRRRDLRLILMSATLNAELF
SKFFGGAPTIHIPGFTYPVRGHFLEDILEMTGYKLSSFNQVDDYGQDKLWKTQKQLLPRK
RKNQITQLVEDALNKSNFEMYSSRTRDSLASWTPDCIGFNLIEAVLCHICRKERSGGVLV
FMTGWDDISCLKDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATN
MAEASITINDIVFVVDCGKAKVTTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECY
HLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPEPLAVQNAVD
FLKMIGALDENENLTNLGKYLSVLPVDPKLGKMLIMGAVFHCLDPILTVVSGLSVRDPFL
LPQDKKDVAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAI
HSLRKQFNFILKDAGLTDADSGTCNSLSHNQSFVRAIICSGLFPGIASVVHREKSMSFKT
MDDGQVLLYVNSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGAVSQGT
MAGHLKMLDGYIDFFMDPSLTECYWNLKEELNNLLQKKLEDPTVDIHRVGKYLMLAVQEL
VSGDQCEGRFVFGRETKKFRATASDNRSNNSIVRDGTNPKCLLQTLLMRAGHSPPKYKTK
HLKTNEFRALIEFKGMQFVGKPQKNKQLAERDAAIEALAWLTHTSDKNRDEDDNSPPDVT
DNMLKLLGKRKRSKQSRG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcgggttagggtttgttctaagaatcggaaaaaccacgatggcgcttccagtt
cgaagatcaccgagttatcggggctgtatttccatctttcaacggttttggtttttgact
tgcgagtatactggaggtggcagagcagttgggcagagtaattctgccattggaaggcga
agtttttgcagttacgctgtcgagcagttttcggacgatgaatatgaatgtgaattcgag
agtcagcaggcatcttcatcagttgccaatattgacgaatggaggtggaagctcagcttg
cttttacgtaatgaagaagaacatgaaataatttcacgagataaaagagaccgacgtgac
tatgagcaaatctctaatcttgccaaagggatgggcctttacagtgaactgtacgggaaa
gtggtggtcgcaagtaaagttcctctgcccaattatagacctgatctcgatgataagcgt
ccacaaagagaggttgtgattcctcttagtttgcaaaggcgagttgaaggcctacttcaa
gaacacctggataggatgcaattgatctctggaaaggttgagaatgtagataatgcaggt
gtaagtcagactgaaattgcaaccttggaagaagaccaagattttttgctagatgaatca
gttatggaaaggattctacagagaaagagcatccgaatgaggaatttgcagaggtcttgg
caggagtctccagagggcatgaagttgcttgatttcaggaaatcattgcctgcttacaag
gagaaggagaggttgctctccgctattgcacgaaatcaggttgtagtgatttctggtgag
accggctgcggaaaaactactcaactgcctcaatatatattagaatctgaggtagagtct
ggacgtggagccttctgtagcatcatctgtacacagcctcgaagaatatctgctatggct
gttgcagaaagagtttcaacagaaagaggggagcctcttggtgaatctgttggttacaaa
gttcgattagaaggaatgaaaggaaaaaacacacatctgcttttttgtaccagcggtatt
ttgctaagaaggttgttgacagaccggaacctgaatggtataacccatgtcttcgttgat
gaaattcatgaacgcggaatgaatgaagatttcttattaattatattgaaggatcttctc
cctcgtcgacgggatctcaggttgattctaatgagtgccactctgaatgctgagttgttt
tcaaaattttttggaggggcccccacaatccatattccgggctttacatatcctgtgaga
ggacattttcttgaagacatattggaaatgactggatataagctgagctcgttcaatcaa
gttgatgattatggtcaagataagctgtggaaaacacagaagcagctgttgccaagaaag
aggaaaaatcagattactcagctcgtggaggatgctttaaacaaatcaaactttgaaatg
tattcctctcgaactcgtgattccctggcttcttggacacctgactgcattggatttaat
cttattgaggctgttttgtgccatatttgtcgtaaggaaagatcaggcggtgtgttagtg
tttatgactggctgggatgatattagttgtctgaaggatcagcttaaggctcatcccctc
ttgggggatccaaacagagttttgctgcttacgtgtcatggctcaatggctacttctgaa
cagaaactcatatttgagaagccacctcctaatgtgcgcaaaatagttcttgcaactaat
atggcagaagccagcattacaattaatgatattgtttttgtggttgattgtggaaaagca
aaagtgactacatatgatgctttgaataacacaccttgcttgctaccatcttggatctca
caagcttctgctcgccaaagaagaggcagggctggtcgtgtgcagccaggggagtgctac
catctctatccaagatgtgtatatgaagcttttgctgaatatcagcttcctgaacttttg
agaactcctttgaattctctatgccttcaaatcaaaagtttgcaattaggaactattggg
gagtttctctcagctgctttacaaccaccggaaccactggctgttcaaaatgcagtggat
tttcttaagatgattggagcattggatgagaatgaaaacttgacaaatcttggaaaatat
ttgtcagtgcttcctgttgatccgaaactaggcaagatgcttatcatgggggcagtgttc
cactgtctagatcccattcttacagttgtgtctggactcagtgttagggatccttttctt
ttacctcaagacaaaaaggatgtggcgggaactgctaaatctagattctcagcaaaggat
tacagtgaccatatggcacttgttcgagcatatgaaggatggaaagatgcagagagagaa
ggatcagcatatgaatattgctggaggaatttcctttctgctcagactctacaggctatt
cattcccttagaaagcaatttaactttattctgaaagatgcaggcttaacagatgcagat
tctggcacctgcaacagtctgagccacaaccaatcatttgtccgtgctattatctgttct
ggtctttttcctggaattgcatctgttgtgcacagagagaagtctatgtctttcaagaca
atggatgatggtcaagtactactgtatgtgaattctgtgaatgcacgttaccagacgatc
ccatacccatggttggtctttggagagaaagtcaaagtcaatactgtgttcattcgtgat
tctacaggtgtatctgattccatcctcatcttgtttggtggtgctgtttctcaaggaacc
atggctgggcacttgaaaatgttggatggttacattgacttcttcatggatcctagtttg
actgaatgctattggaacctaaaagaggaactcaataaccttctccaaaagaagcttgaa
gatccaactgttgacattcacagagtgggcaagtatctcatgcttgctgtgcaggaacta
gtatctggagaccaatgtgaaggaaggttcgtgtttgggcgtgaaacaaagaagtttagg
gcaactgctagtgacaacaggagcaacaacagtattgtgagggatggcaccaatcccaaa
tgcctgcttcagaccctactgatgagggctgggcacagtcctcctaagtacaaaaccaag
caccttaagaccaacgaatttagagctcttatcgagttcaaagggatgcagtttgtgggg
aagccccagaagaacaaacaactggcagagagggatgctgccattgaggctttggcatgg
ttgactcatacgtctgataagaacagggatgaagatgacaattccccgcctgatgttact
gataacatgctaaagctactaggaaagcgtaagagatcaaagcaatcccgaggttga
DBGET
integrated database retrieval system
