Aristolochia californica: 137967217
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Entry
137967217 CDS
T10486
Name
(GenBank) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acak Aristolochia californica
Pathway
acak03013
Nucleocytoplasmic transport
acak03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137967217
03015 mRNA surveillance pathway
137967217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137967217
Enzymes [BR:
acak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137967217
5.6.2.5 RNA 5'-3' helicase
137967217
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137967217
mRNA cycle factors
Common to processing body (P body) and stress granule
137967217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
137967217
NCBI-ProteinID:
XP_068669830
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MAAQTVVPNNLYDTASQPDTGGDAYTFLEFNTQGDDYDYPEFRELSQPIRSSVWPSSSDS
VPDPADRPADLQTDAGAASTPSSSASKARGGSNSPTIDGLASGMGNLNFEETGEDDSYEF
GKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKED
NELRLVPGDELRLRYSGDATHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVD
FVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNTLPRRFGAPGLPELN
ASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQSTEPECLIPL
VLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQYRMHPCLSE
FPSNSFYEGTLQNGVTINERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLLFGGGPGAVSNDTFSSLGSSSPNAD
KRGNRGKGHSYMQFGTPNGTHKPGVHPTGYAVPRIPLPQFPGGPHSQPYAIPTRGAVHGP
IGAVPQVPQGGSRGFGAGRGNAGGPIGGHLSHQQGSQQPIGNLGSAFNFPGLENPNSQPS
VGAPLSQTGLMTQMPVQGLSQTFREGFSIGGMSQDFLGDDFKSQGSHVAYNVADFSTQAS
QSGYGVDYVARGSQTGFPGSFLNQNTQGGYSHLGTGNDFISQDYMPHGSQGLFTQVGFND
HQQDESSQSHFGVAGPSPLQSQGPMNPLYSQPFTQYNSQPMTLQTAQQQPGQSAQSQKLH
FNG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcagactgtcgtccccaacaatctctacgatacggcgtcgcagccggacact
ggcggagatgcgtataccttcctggagtttaatacccagggcgacgactacgattatcct
gaattccgtgagctctctcagcccattcgttcctccgtttggccgtcctcctctgactcc
gtacccgacccggctgaccgccctgctgatctccagaccgatgccggcgccgcttccacg
ccctcgtccagcgcttctaaagcgcgaggtggtagcaattctcccactatcgatggactt
gcctccgggatgggcaacttgaattttgaggagacgggtgaggatgatagttatgagttt
ggaaagggggattttacggagcatgcttgtcgatactgtggggtgcagaacccggcatgt
gttgtgaggtgtaacgttccttcttgccgcaagtggttttgtaactcgagggggaacact
tcgggctcgcatattgttaatcacctggtccgtgcaaagcacaaggaagtttgtcttcat
aaagatagccccttaggggaaacaatccttgaatgttataactgtggctgccgaaatgta
ttccttttggggtttatatcagccaagactgagagcgtagttgttctcttatgtcgggag
ccttgtctgagtgtcaatgcactgaaggacatgaactgggacttgagtcagtggtgccca
cttattgacgataggtgtttcttgcagtggcttgtgaagatcccatctgagcaggagcag
ttgagagcacggcaaattagtgcccagcagatcaataaagtagaggaattatggaaaaca
aacccggatgctactcttgaagatcttgagaagcctggagtagatgatgaacctcaacct
gtggctttgaagtatgaagatgcttatcagtatcaaaatgtgtttgccccacttgtcaaa
cttgaagctgactatgataaaatgatgaaagaatcccaaagtaaagataatgtaaccata
cgttgggatattggtttgaataagaagcggattgcatactttgtattccctaaggaagat
aatgagttgcggcttgttccgggtgatgagttacggctacgttattcaggtgatgcaaca
catcctgcatggcagtcagtggggcatgtgatcaagctaactgcacaagaggaagttgca
cttgaactacgtgctagtcagggtgttccagttgatgtgaaccatggctttagtgttgat
tttgtctggaagagtacaagctttgatcgaatgcagggagcaatgaagactttcgctgtc
gatgaaacaagtgttagtggctatatctatcatcacttgctggggcatgaagttgaactt
caggttgttcgtaatacacttcctcgtcgttttggtgctccaggccttcctgaactcaat
gcttctcaggtgtttgctgttaaaagtgtccttcagaagcctatcagtttaatacagggt
cctcctggtacagggaaaactgttacgtctgctgccatcgtgtatcatatggcaaaacaa
ggccaagggcaggtcttagtctgtgcccctagtaatgttgcagttgatcagctggcggag
aagattagtgctactgggttgaaggtagtcagattatgtgcaaaatcaagggaagctgtt
agctctcctgttgagcatttgacacttcactaccaggtcaggcatctggacacttctgaa
aaaagtgaacttcacaagcttcaacaattgaaagatgaacaaggggaactgtcaagcagt
gatgaaaagaagtacaaggctttaaaacgtgcgactgagagggaaatatcccagagtgct
gatgtcatttgctgcacttgtgttggtgcaggtgatcctcgattagcgaacttcagattt
cgccaggttcttattgacgagtctacccagtcaacagagcctgagtgccttatccctttg
gttctcggggtcaaacaggttgttttagttggggaccattgtcaactaggtccagtgatt
atgtgcaagaaagcagctcgtgccggtctcgctcagtccctctttgagcgacttgtacta
cttggagtgaaaccatttagattgcaggtccaatatcgcatgcatccttgtttatcagaa
tttccttcaaacagcttctatgaaggtacccttcagaatggagtgactatcaatgagagg
cagacaactgggatagactttccctggcctgtaccaaatcgtccaatgttcttttatgtt
cagatgggacaagaggagataagtgccagtgggacatcctacctaaataggactgaggct
gcaaatgtggaaaaaattgtcaccacatttctgcgaagtggtgtggttcctagtcagata
ggagtcataacaccatatgagggacaaagggcttacattgtgaattatatgtcaagaaat
ggggctcttagacagcagctttacaaggaaattgaggtcgcaagtgttgactcttttcag
ggaagagagaaagattacataattttgtcctgtgtgaggagcaatgagcatcagggaatt
ggattccttaatgacccaaggaggttgaatgttgcattgacccgtgctcgttatggaatt
gttatattgggaaatcctaaagtccttagcaaacaacccctgtggaacagcttattgact
cattataaggaacatgaatgtcttgtagagggtcctcttaataacttgaagcaaagcatg
gttcagtttcaaaagccaaaaaagatttacaacgatcgtcgacttctgtttggtggtgga
cctggggcagtgtcaaatgataccttcagctctcttggttcatcaagtcctaatgctgat
aaaaggggtaatcgtggtaaaggtcattcttatatgcagtttggaacacccaatggtacc
cacaagcctggtgtccatccaacgggatatgctgttcctcgaatccctctcccacaattc
cctggtgggccacattctcaaccatatgctattccaactcgtggggctgtccatggacca
attggagctgttcctcaggtgcctcagggaggaagcaggggttttggagctggacgaggt
aatgctggcggtccaataggcggtcacctctctcatcagcaaggttctcagcaacctatt
ggaaatctagggtcagccttcaattttcctggtttggaaaatccaaatagtcagccatct
gttggggccccactatctcaaacgggacttatgactcagatgcctgttcagggcctaagc
cagacattccgtgaagggttttccattggtggcatgtctcaggattttcttggtgatgac
ttcaaaagccaaggatcacatgttgcatataatgtcgcagatttttctacacaggcttct
cagagtgggtatggagttgattatgttgctcgaggaagccagactgggttcccaggaagc
ttcctaaaccaaaacactcagggtggatattcccacttgggcacgggcaatgacttcatt
tctcaggactacatgcctcatgggtctcaaggtctatttacacaagttggctttaatgat
catcagcaagatgaatcttcacaatcacactttggtgtagcaggacctagtcctcttcaa
tcacagggcccaatgaatcctctctactctcagccattcacacagtataactcgcagccc
atgaccctgcaaactgcacagcaacagccgggccagagtgcacaaagccagaaactgcac
ttcaatggctga
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integrated database retrieval system
