Acaryochloris sp. 'Moss Beach': HRE53_06420
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Entry
HRE53_06420 CDS
T09726
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acam
Acaryochloris sp. 'Moss Beach'
Pathway
acam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRE53_06420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acam03019
]
HRE53_06420
03009 Ribosome biogenesis [BR:
acam03009
]
HRE53_06420
Enzymes [BR:
acam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HRE53_06420
Messenger RNA biogenesis [BR:
acam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HRE53_06420
Ribosome biogenesis [BR:
acam03009
]
Prokaryotic type
rRNA processing factors
HRE53_06420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF2752
Motif
Other DBs
NCBI-ProteinID:
UJB70695
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All DBs
Position
1432823..1434925
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AA seq
700 aa
AA seq
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MPKQIIIAEQHRIAAVFSEDQIQELIVATGSHQVGDIYLGIVENVLPGIDAAFVNIGDAE
RNGFIHVSDLGPVRLKRNSGAITELLTPQQKVLVQIMKEPTGTKGPRLTGNVSLPGRYLV
LMPSGRGVNLSRRIRIEDERSRLRALGILIKPAGMGLLVRTEAEGVAEEAIIEDLELLQR
QWESVQQQAASTRAPALLDRDTDFIQRVLRDVYSNNVNRIVVDSTPGLKRVKQHLVNWNN
TNKLPQGVLVDQHRESTSILEYFRVNAAIREALKPRVDLPSGGYIIIEKTEALTVVDVNS
GSFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIIIDFIDMDSRRDQLQVLEQFNKA
LKADKARPQIAQLTELGLVELTRKRQGQNIYELFGTPCPACGGLGNLVHLPGEAAPTVGE
VERSETTKPTPISTSGIPLPGISANLNDQIHLDPSDDLQELDLTNHPSYQERGNRRRRRR
SRLGDNLSRESISPRLVRNGSTSDSKPVVKNTSDTNGSDASKSEGNESSERSERSERSER
SRSRSSTRQRQDTPPEVISVTMTSEEQDIYAFMGISPVVLFPGEIKKPKSAIVEILAPGD
NPAPAATETAAIKVVTETAAIKVVNKAIAATQDEKEELDEVETAPPAKAEVAKIEPVLVA
TPEPAEEKPAEPAQTSTRRRRRRSSAPSAKQLSLDPNEDS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcaaattatcattgccgagcagcatcggatcgctgctgtattttcagaagat
caaatccaagaactcatcgttgccactggcagtcatcaggtaggagacatctacctaggt
atcgttgagaatgtattacctggcattgatgctgcctttgtcaatattggcgatgctgaa
cgcaatggatttattcatgtcagcgacttgggtccagtgcgcttaaagcgcaactctggt
gcgattactgaactgttaacgccccaacaaaaagtattagtccaaatcatgaaggagcca
acagggactaaaggtccaaggctcacgggaaatgtatctttaccgggtcgctacctggtc
ctcatgccctcagggcggggggtcaacctatcccgccgcattcgcatagaagacgaacga
agtcgcttacgcgccctcggcatattaattaagcctgcaggtatgggcttgttggtccgt
actgaagccgaaggtgttgccgaagaagccatcattgaagacttggaactcttacaacgg
cagtgggaaagtgtccagcagcaagccgcttcgacgcgagcccctgcactgctagatcgg
gatacagactttatccaaagagtcctccgagacgtttacagcaataatgtcaatcggatt
gtggtggattctaccccaggtctcaaacgggtcaaacagcacctggtgaactggaacaat
accaacaagttaccccaaggggtattggtcgatcagcatcgtgagtccacctccatcctg
gagtatttccgcgtcaacgcggctatccgagaagccttaaaaccaagggttgacctacct
tctggtggatatatcattattgagaaaacagaagccctcaccgttgttgacgtcaactcc
ggctctttcactcgctccgccacagctcgagaaacggtattgtggaccaactgtgaggct
gccactgaaatcgctcgtcagctgcggttacggaatatcgccggcgtcattatcattgac
ttcattgatatggactctcgccgcgatcaactacaagtcctagagcagtttaataaagcc
ttaaaagcagacaaagctcgcccccaaattgcccagctgaccgaattaggcttagtcgaa
ctgactcgcaaacggcaaggacaaaatatttacgagctatttggcaccccctgtcccgcc
tgtggggggcttggaaatctggtccatctcccaggtgaagctgcaccaaccgtgggtgag
gtggaacgatctgagaccactaaacctacccccatcagtacatccggtatacccttacca
ggcatctcggccaacttaaatgatcagatccatctcgatccatcggatgacctgcaagaa
cttgatttaacgaaccatcccagctatcaagaacgaggcaaccgccgacgtcgacgccgt
tctcggttaggagataatctttctcgggaatccatcagccctcgtttagttcgcaatggt
tctacctcggattctaaaccagtcgtcaaaaacaccagcgacaccaatggttcagacgca
agcaaaagcgagggaaatgaaagctcggaacgctcggaacgctcggaacgctcggaacga
tctcgaagccgctccagcactcgtcaacgtcaagacacaccgccagaagtcatctccgtg
accatgacctccgaagagcaggatatctacgcttttatgggtatttcgcctgtagtcttg
ttcccaggcgagatcaaaaagcccaaatcagccattgtagaaatcctcgcaccaggggat
aacccagcaccagctgctactgaaacagcagccatcaaagtggtcactgaaacagcagcc
atcaaagtagtcaacaaagcaatcgctgccacccaagatgaaaaagaagagctagacgaa
gttgaaactgccccccccgccaaagctgaagtggctaaaatcgaaccggtattagtcgcc
acgcctgaaccagctgaagaaaagccagctgaacccgctcagacgtctactcgccgccgt
cgtcgccgatcttcagctccatcagccaaacagctttcgttagaccccaatgaagattct
tga
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