Acaryochloris sp. 'Moss Beach': HRE53_18515
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Entry
HRE53_18515 CDS
T09726
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acam
Acaryochloris sp. 'Moss Beach'
Pathway
acam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRE53_18515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acam03019
]
HRE53_18515
03016 Transfer RNA biogenesis [BR:
acam03016
]
HRE53_18515
Enzymes [BR:
acam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HRE53_18515
Messenger RNA biogenesis [BR:
acam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HRE53_18515
Transfer RNA biogenesis [BR:
acam03016
]
Prokaryotic type
tRNA degradation factors
HRE53_18515
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
OB_RNR_1st
OB_Dis3
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
UJB68503
LinkDB
All DBs
Position
complement(4035070..4037382)
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AA seq
770 aa
AA seq
DB search
MEFSISTLLNNFADDKLLAPKALEKKLDCQASDGIRQLQITLEALEKVGILTKERGKYKR
LPEEGVVEGKLRCSSKGFCFAIQDQDDTEDIYIRESQLNTAWNGDRVLVKVTKEGRRRRS
PEGEVRLILERSNPSVIARVKKTEAGEYRAVPLDDRLLFELALHQEADGPDLEAAIDQLV
HVEIVRYPLGQLSPLGRVTQVLGSDAQSAADTELVFCKYDLPRSFPEDVLEEAEALPKKL
RKADQKKRVNLLKVPTFTICDRTPNPTQLDHAFSVEKLRGNKWRVGVHVTDLVYYLDADS
SIERQASQRSASMFLGDTALPLFPETCIERIGALTAGKDHLTFSALVTLNNDGEVLEFEI
QPSVIHVDQHLAYEQVQDILDGDSKDKPLADAIQLFQTVSEALKKQRYERGGFDLLLSTA
PPQVIGDEGDLGAVILAPPAQAHSIVADLLVLANHLVLSHLQELAIPGVYQIQAPPDAQD
LQDLLKLSDNIQLSLSLQQEDTVQPQDFQTFSQTFQTSERSAILFELLQTTLKPVQYSAV
SGPHFGLALVNNYGHFTSPLNRYGDLLNQRILHAVFTEGRDRRTSRAKEKVDLRHSSCHG
QISWNVLPPETQRHLEALITDAIPQLNEQADLARQACQDLTGLQKTKQMQTHTGEVLQGI
ITGIQSYGFFVRIETLMVEGLVHVSSLKDDWYEYRSRQQTLVGRKNRCQYRLGDRVDVEV
KSVDYYRQQIDLIVVGGGSEAPEDEVTEAPIKVNGNGNDESDLPDETEEE
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcgattagtactctgctgaacaactttgcagatgataagttactcgctcca
aaagctttagaaaagaaattagattgccaggcttctgatggcatcagacaattgcaaatc
accttagaagccctggagaaagtcggtatcctcaccaaagaacggggtaaatataagcgt
cttccagaagaaggggttgtcgagggcaaacttcgctgctccagtaaaggcttttgcttc
gccattcaagatcaagacgatacagaagatatttatattcgagagagccagctcaatacg
gcttggaatggtgatcgtgtcctcgtcaaagtcaccaaggaaggacgccgccgccgcagt
cctgaaggtgaagtccgactcattctggaacgctctaacccatccgtcattgccagggtc
aaaaaaacagaagcgggggaatatcgagctgttcccctcgatgatcgccttttatttgaa
cttgctctccaccaagaagcagatggccccgacttagaagcggccattgatcagctggtg
catgtggagattgttcgctaccctctaggacagctctcccccctaggccgtgtcactcag
gtcctaggcagtgatgcccaatcagcggctgatacagagctagtcttttgtaagtacgat
ttgcctcgttcttttcctgaagatgttttagaagaggctgaagcgctcccgaaaaagctg
cgaaaagccgatcagaaaaagcgggtgaatctgcttaaggtgcccacgtttacgatttgc
gatcgcacccccaatcccacccagctagaccatgccttttccgtcgaaaaattaagaggc
aacaaatggcgagtaggcgtccatgtcaccgacttagtctattacctcgatgcagactcc
tccatcgaacgccaggccagccaacgcagtgcctccatgttcctgggtgatacggcactg
ccccttttcccagagacctgcatcgagcgcattggtgccctcaccgctggcaaagatcac
ctcaccttttctgcattggttacgctgaataacgatggggaagttttagaattcgaaatt
caaccctccgtgattcatgtggatcaacacttggcctatgagcaagtgcaggacattctg
gatggagatagcaaagataagcccctcgcagatgccattcagctatttcagacggtcagt
gaggccctgaaaaagcaacgctatgaacgcggtggttttgatctattgctatccaccgct
cctccccaagtcattggggacgaaggagatctaggggcagtcatcttagcgccacccgcc
caggcccacagcatcgtggccgatctgttagtcctcgccaatcaccttgttctttcgcat
cttcaagaattggctattccaggggtctatcaaattcaagccccacccgatgctcaggat
ctccaagatctgctcaagctatctgacaatattcaactttcattgagcttgcagcaggaa
gacaccgttcaaccccaggatttccaaacctttagtcagacctttcagacttcagaacgc
tcagccatcctgtttgaactactgcaaaccaccctcaagcctgtccagtacagtgcggtt
tcagggccccattttggcttagccctagtcaataactatggccacttcacctctcccctt
aatcgatacggcgatttgctcaatcagcgcattttgcatgccgtctttacggaagggcgc
gatcgacgaacctcccgtgccaaggaaaaagtggacttacgccatagctcttgtcatgga
cagattagctggaatgtcttacccccagaaactcagcggcacttagaagccctgattacg
gatgcgattccccaattgaatgagcaagccgacctagcacgtcaagcttgtcaagatctg
accgggttgcaaaagacgaagcaaatgcaaacccatacgggcgaagtgctgcaaggcatt
atcaccggaattcagtcttatggtttcttcgtgcgcattgaaaccctaatggttgaaggg
ttagtgcatgttagttccctcaaagatgattggtatgaataccgatctcgccaacaaacc
ttagttggccgcaaaaatcgctgtcagtatcgtttgggcgatcgcgtggatgtcgaggtc
aagagcgtcgattactatcgccaacaaattgacttaattgtcgtcggtggcggtagcgaa
gcccctgaagatgaggtgaccgaagcccccatcaaagtgaatggtaatggtaacgatgaa
agcgatctcccagatgaaactgaggaggaatag
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