Acanthamoeba castellanii: ACA1_012330
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Entry
ACA1_012330 CDS
T02667
Name
(RefSeq) WD domain, G-beta repeat-containing protein
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
acan
Acanthamoeba castellanii
Pathway
acan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACA1_012330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_012330
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
ACA1_012330
mRNA degradation factors
5'-3' decay
Decapping complex
ACA1_012330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
YGR210-like_G4
Motif
Other DBs
NCBI-GeneID:
14924158
NCBI-ProteinID:
XP_004352712
UniProt:
L8HCD7
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MGEPSPLSKFFPHLAAMSQHPPHPQQQHPGLAHPAAMSHMGAPHPHYPMHPAHAPQMAFS
PHQMHMMGDPRGHPMGAILPLPPSLGHPSSPSPLPPPGLSAPHMHAPISSSPASASVQHH
RAASPARHSSVASAPSRPTSNASPARKKAAPQQQQRAASGERLPDGVEVTYRMEGQQPAY
SQLEVTPITLLNSPPVYQRGSLIAVNHNYICYVVKGNMIRVINIFSAKRALLRGHTKGIT
DLRFCGGNEDVLASVAADGRLLVWRFSEEATSTPSSGDEEAGIGHELVAAVRMEGDRWSE
RIIWHPVHSHLLATAGNDQHAYVWDLKRIRQLKHTAEDGKNVFVYAGTEPVDGVIRIAVG
APINDLAFAPGGEALATASSDGRVQIWSASGGATPTPSLSWLAHENEAWGVVYHQEGKIL
ITGGQHNAELCVWQLSEDEGTEPVLLQRIKFAPPPSGAIFNHIVLESSGNYLFVANAKST
TFMVLHLQTQPQPRFDYLTEFSVAQAILSFTVLNRGTSKTEPEMDLYCLQTKAIQMYHIT
SNLCYAAPSAATAAPPAAAAVASAALPTPPGSGGAPTVPATAATSRSTSPSPKEPLAASP
APSPPTSTTSAESSAQAAPVAEPSRPESPSNAVVEPSAAAAEPTHDKQSIENGPTSPAAV
APEPTPAPSAQDELAAPQPSEAQPEPTPASAPEEKPSAATPAEPAENGHAEPATTDVEVT
AKPEEPEQPVEKGEAAGETEPAAETSAAAPVEEKEKEAAGEGEAEATPSPADEVPEFPVQ
PAETESAGVENKEEAAEALVDEEQPPKAEEQPQPEPEAKEEPTPAAVATPETAPTTAEGE
MPQSQLKTPGELAQPPAPPKKPKAGKAEGRAYQATGQAVANAQQPLARAPPAEVSEPTAA
PVESTAAPAAGNLQAELRRMENSLLNGINARMERALQQHADRQVAKAEKDRQERDKAERE
RQQRLLAAVTQAVNAGLTGIPQQVEKAVQKELQTALVPALGRLLTSLEKNLAKSLADDLK
PVLAHGQTNGTWAQDLPPRLASEVASRLPSANDIANALQGSVRHAMEASFRSSFQETIIP
SFQGSCQSMFQQIYGTMLPGLQQTIEEAVEPGLNKLATGDLRETLQSLTNAVNDLRELSA
RNAELFQTLSQSSPSARLGLQPPGSGLPEQHVTEAQLLQLLERDAY
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagccgtcgccattgagcaaattcttcccccatctcgcggccatgtcgcaacac
cctcctcatcctcaacagcaacatccaggactcgctcaccccgcagcgatgtcccacatg
ggcgcaccccatcctcactaccccatgcatcccgctcatgcgcctcaaatggcgttcagc
ccgcatcaaatgcacatgatgggcgatcctaggggacaccccatgggtgccatcctccct
cttcctccttcactcggccatccctcttctcccagccctcttcctcctcccggcctatcc
gccccccatatgcacgctcccatctccagcagccctgcctcggccagtgtccagcaccat
cgagcagcgagccctgcccgccacagcagcgttgcctcggctccatccaggcccaccagt
aatgcatcccctgctcgcaagaaggccgcgcctcaacaacagcagcgggctgcttcgggc
gagcgactgccggacggcgtggaggtgacgtaccgaatggaaggacagcagcctgcttac
agtcagctcgaggtgactcccatcacccttctcaactccccacccgtgtaccagcggggc
agcctcatcgccgtcaaccacaactacatttgctacgtggtcaagggcaacatgatccga
gtcatcaacatttttagcgccaagagagcgcttctgcgcggccacaccaagggcatcacc
gaccttcgcttctgcggagggaacgaggacgttctcgcaagcgtggctgcggacggccgc
ctgcttgtgtggcgcttctccgaggaggccaccagcaccccgtcctcgggcgacgaggag
gcgggcatcggccacgaacttgtggcggcggtgcgtatggaaggcgaccggtggagcgag
cggatcatctggcatcctgttcactcccacctgttggccaccgccggcaacgatcagcac
gcgtatgtgtgggacctcaagcgcattcggcagctcaaacacactgcggaagacggcaag
aacgtattcgtgtacgccggcaccgaacccgtggacggtgtaatccgaattgctgtgggc
gcgcccatcaacgacctggcctttgcgcccgggggcgaggcgctcgccacggcctccagc
gatggccgcgtccagatctggtcggcctccggtggagccactcccacccccagcctctcc
tggctcgcccacgaaaacgaggcctggggtgtcgtctaccaccaagagggcaagatcctc
atcaccggcggccagcacaacgccgagctctgcgtgtggcagctgagcgaggacgaaggc
accgagcccgttctcttgcagaggatcaaattcgcaccgccgcccagcggagcgatcttc
aaccacatcgttctcgaatcctcgggcaactacctctttgtggccaacgccaaatccacc
accttcatggtcctccacctccaaacgcaacctcagccgaggtttgattacctcactgaa
ttctccgtcgcccaagccattctgtcgttcactgtcctcaatcgtggcacttccaaaacc
gagcctgaaatggatctctattgcttgcagaccaaggcgatccagatgtaccacatcaca
tcgaatctgtgctatgcggctccttcggctgccaccgccgcaccgccggctgctgctgcc
gtcgcctcggctgctctgccaacccctcccggatcaggtggcgctcccaccgtcccagcg
accgctgctacgtcgcgctcgacctcgcccagcccgaaggaaccgctcgctgcctcacct
gcgccctctccgcccacctcgacaacgagcgccgaatcgagcgctcaagccgctcctgtc
gccgagccttcgcgtccggaaagcccgtccaacgccgtcgtcgagccgtccgctgctgcg
gcggagcccacgcacgacaaacaatcgattgagaacggaccgacgtctcctgccgcggtc
gcccctgaacctacgccggcgcccagcgctcaagacgagctcgcagcgccgcagccttcc
gaggcccagcccgagccaacgcccgcgtctgcgcccgaagaaaagcccagcgcagcgact
cccgccgaacctgcggagaacgggcacgcggagcctgccacgaccgatgtcgaggtgacc
gcaaagccggaggagcccgaacaacccgtggagaagggcgaggccgctggcgaaacagag
cctgctgctgagacgtccgccgccgcacccgttgaagagaaggagaaggaagccgcgggc
gaaggagaagccgaagcaaccccgtcacccgctgacgaagtgcccgagtttccggtccag
cccgccgaaaccgagagtgctggcgtcgagaataaggaagaggctgcggaggccctcgtc
gatgaggaacagccaccgaaggccgaggagcagccccaacccgagcccgaggcaaaagag
gagcctaccccggctgctgtcgcgactcctgaaactgctccgaccactgccgagggcgag
atgccgcagtcgcagcttaagacgcccggcgaactggcccaacctcctgcgccaccgaag
aagcccaaggccgggaaggccgagggccgtgcctaccaggcgacgggccaagccgtcgcg
aacgcgcagcagcccctggcccgcgcccctcccgctgaggtcagcgagccgacggcagcg
cccgtggagtccaccgctgcaccagcggcaggcaatctccaagccgagttgcgaagaatg
gagaacagtctgctcaacggcatcaacgcgaggatggaacgcgccctgcagcagcacgcc
gaccgccaggtggccaaggccgagaaggatcggcaggagcgcgacaaggccgagcgcgag
cgccagcagcgcctgttggctgccgtcacgcaggccgtcaatgcggggctcactggcatt
ccccagcaggtcgagaaggccgtgcagaaggagctccagacggcgctcgtccctgctctc
gggcgcctgctcacgagcctggagaagaacctggccaagagcctggcggacgacctcaag
ccggttctcgcgcatggccagaccaacggcacctgggcgcaggacctgccgccccgcctc
gcgtccgaggtggcttctcggctcccctcggcgaacgacatcgccaatgctctgcaggga
agcgtgcgccatgccatggaggccagcttccgctcgtcgttccaagagaccatcattccc
tcgttccagggatcttgtcaatccatgttccagcagatctacggcactatgctgcctggc
ctccagcaaaccattgaggaggcggtcgagcccggcctgaacaagctggcgaccggcgat
ctcagggagacgctgcagtcgctcacgaacgcggtcaacgatctgcgcgagctctccgct
cgcaacgccgagctgttccagacgctctcccagagctcgccgagcgcgcggctcggcctg
cagcctcccggttcgggcctccccgagcagcacgtcaccgaggctcagctcctgcagctg
ctcgaacgcgacgcctac
DBGET
integrated database retrieval system
