Acanthamoeba castellanii: ACA1_053640
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Entry
ACA1_053640 CDS
T02667
Name
(RefSeq) Transcription elongation factor, putative
KO
K15172
transcription elongation factor SPT5
Organism
acan
Acanthamoeba castellanii
Pathway
acan03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
ACA1_053640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acan03021
]
ACA1_053640
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_053640
Transcription machinery [BR:
acan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
ACA1_053640
RNA polymerase I system
ACA1_053640
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
ACA1_053640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW5_SPT5
KOW2_Spt5
KOW1_SPT5
KOW
KOW4_SPT5
Spt5-NGN
KOWx_SPT5
KOW7_SPT5
GPKOW_C
KOW6_SPT5
Spt5_N
DUF4438
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
14921498
NCBI-ProteinID:
XP_004344033
UniProt:
L8H676
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MSSNSEDDRDDDLDEVEDDEVSEDMDSEEEEERRPPSSAGRKRGGEDGGGRGGGGGAAAK
RRRRSGGAGDVSRFFELEAKDTDEEGSEEEEEVEELFADEAAEAEALATATRERERTRRA
MVAEALGGEDGEEDVRAKARELEERYRYYGRAEYGGGEGGAEERGEIAQQSFLPSVRDPK
LWLIKCKKGKERETVVCLMQKYFDVDGTDRQLLIKSASCADNLKGYIYVEAEKEIHVKQA
ITGLRNLIAWDLKLVPLKEMTAIFTVAKKALNLRRDAWVRIKRGTYKGDLAQVLDVDETR
ARVTVRLIPRLDLTKLHSVADLDDDEDDDDATAKRKRKTRPPQRFFNDEEVRKLAGSEVE
SRPSGRGGKYFVFAMQKFKDGFLHKPMNIKSLETDNIEPTLDELQKFQAPPSSLAGGGNG
DDDDGAGSAAVALSSTLSALAKSQQQGAGAGGKKRGATFIKGDAVAVVEGDLKHLMGIVE
SVSDNMVTILPKHEDLRDLLTFPAEQLTKYVKMGDHVKVISGRFEGETGLILRVDGNIVT
IFSDLTMKEIQVLAQDIQEATEVAAGNLQLGNYELHDLVQIDPQTVGMIVKVERDSFRIM
DTAGKVTSYPLQAIQNKRTNRHAVAFDKNQSQVTVGDVLQVVEGPLKGRQGTVRHIHRYF
AFLHSNAVLDNTGIFVVRVASTTVLGGGKNRARPGPSPSARGAHSAAGGGGYGHGHHPMS
GMPSPSRSLMSPSRSLGSGPPGGGPRGRPQDPAGGRGRGGGRGRGRGREDSLIHKTVTVG
RGPWKGYVGIVVDATDNSARVELHTNCKTVNVDRTFLTIIDAEGRREPATAAGAASGGFQ
EGVPATPSWASSRTPMRGDGDGSATPMRAGTPMRSSTPSHDAWNPTTPSRATSWDDNPVG
HHPNEYGSIGGSYGVAAGGYAQSSSSSSSSAITPFSPFSPAPVGRDRDDQMLLPRTPSEG
IYNPATPSGGYTPHFTPMESHYTPDQPTPRGGPNEVSTPGYTPYTATPQAYPATPATPGI
PQTPGTPGMMSLPSLARASAPATPGMISYDSDRVDTTNTVAGGVMSTDEPWTTEGIEVRV
SDAYRGGQYSQASAVITSAGRDSCRVTVRDRDGNDLESLSIPSPYLEPVVPAKKDRVKVI
RGELKGNVGLLVGIDGSDGIVKMEPNLDIKLLALPLLARYHHRK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaattctgaggatgatcgtgatgatgacctcgatgaagtggaggatgacgag
gtgagcgaagatatggacagcgaggaggaagaggagcgccggccgccgagctcggcggga
cgtaagagaggcggcgaggatggaggggggcgaggaggaggcggcggggcagcggccaag
aggcggcggcgcagcgggggtgcgggcgatgtgagccggttcttcgagctggaggccaag
gacacggacgaggaggggtcggaggaggaggaggaggtggaggagctgtttgccgacgag
gcggccgaggccgaggcgctggcgacggcgacgcgggagcgggagcgcacgcggcgggcc
atggtggccgaggcgctgggcggggaggacggggaggaggacgtgcgggccaaggcgcgc
gagctggaggagcgctaccgctactatggccgggccgagtacggcggcggcgagggcggg
gccgaggagcggggcgagatcgcgcagcagagcttcctgccctcggtgcgcgaccccaag
ctgtggctgatcaagtgcaagaagggcaaggagcgggagaccgtcgtctgcctcatgcaa
aagtactttgatgtggatggcactgatcgccagctgctcatcaagtcggcctcgtgcgcc
gacaatctaaagggctacatctacgtcgaggccgaaaaagaaatccacgtcaagcaggcc
atcacgggactgcgcaatctcatcgcctgggatctcaagctggtgcccctcaaggagatg
acggccatcttcaccgtggccaagaaggcgctcaacctgcgccgcgacgcctgggtgcgc
atcaagcggggcacctacaagggcgacctcgcccaggtgctcgacgtcgacgagacccgc
gcgcgcgttacggtgcggctgatcccgcggctcgacctcaccaagctccacagcgtggcc
gacctcgacgacgacgaggacgacgatgacgccacggccaagcgcaagcgcaagacgcgc
ccgccgcagcgcttcttcaacgacgaggaggtgcgcaagctggccggcagcgaggtcgag
tcgcggccgtcggggcgcggcggcaagtactttgtgtttgccatgcagaagttcaaggac
ggcttcctgcacaagcccatgaacatcaagagcctcgagaccgacaacatcgaacccacc
ctcgacgagctccagaagttccaggccccgccctcgtccctggccggcggcggcaacggc
gacgacgacgacggggcgggctcggcggcggtggcgctgtcgtcgacgctgtcggcgctg
gccaagtcgcagcagcagggcgccggcgcgggcggcaagaagcgcggggccacgttcatc
aagggcgacgcggtggcggtggtggagggcgatctcaagcacctgatgggcatcgtcgag
tcggtgagcgacaacatggtcaccatcctgcccaagcacgaggacctgcgcgacctgctc
acgttcccggccgagcagctgaccaagtacgtcaagatgggcgaccacgtcaaggtcatc
tcgggccggttcgagggcgagacgggcctcatcctgcgcgtggacggcaacatcgtcacc
atcttctccgacctcaccatgaaggagatccaggtgctcgcgcaggacatccaggaggcc
accgaggtggccgcgggcaacctgcagctgggcaactacgagctccacgacctggtccag
atcgacccgcagaccgtgggcatgatcgtcaaggtcgagcgcgactccttccgcatcatg
gacaccgcgggcaaggtcacctcctacccgctccaggccatccaaaacaagcgcaccaac
cgccacgccgtcgccttcgacaagaaccagagccaggtcaccgtcggcgacgtcctccag
gtcgtcgagggaccgctcaagggccgccagggcaccgtgcgccacatccaccgctacttt
gccttcctccactccaacgccgtgctcgacaacaccggcatcttcgtcgtacgcgtcgcc
agcaccaccgtactcggcggcggcaagaaccgcgcccgccccggaccctccccctccgcc
cgcggcgcacactcggcggccggcggcggcggctacggccacggccaccacccgatgtcc
ggcatgcccagcccctcccgctccctcatgagcccctcccgctccctcgggagcggcccg
cccggcggaggcccccgcggccgcccacaggatcctgccggcggacgaggtcgcggcggc
ggccgaggccgagggcgcgggcgcgaggacagcctcatccacaagaccgtcacggtcggg
cgaggcccgtggaagggctacgtgggcatcgtcgtcgacgccaccgacaacagtgcccgc
gtggagctccacaccaactgcaagaccgtcaacgtggaccgcaccttcctcaccatcatc
gacgccgaaggccgccgcgagcccgccacggccgccggagccgcctcgggaggcttccag
gagggcgtccctgcgactccctcgtgggcctcctcccgcacgcccatgcgcggcgacggc
gacgggtccgccacgcccatgcgggccggcacgcccatgcggtccagcacgccctcccac
gacgcctggaacccgacgacgccttctcgcgccacctcgtgggacgacaaccccgttggc
caccaccccaacgagtacggcagcatcggcggctcctacggcgtcgcggcaggcggctac
gcccaatcctcctcatcgtcgtcgtcgtcggcgatcacacccttctcgcccttctccccg
gcgccggtgggccgcgaccgggatgatcagatgttgctgccgcgcacgccctcggagggc
atttacaacccggccacgccctcggggggctacacgccccacttcacgcccatggaaagc
cactacacgcctgaccagcccacccctcgcggaggacccaacgaggtgtcgacgcccggc
tacacgccctacaccgccacgccccaggcctaccccgccacgccggccacccccggtatc
ccgcagacgcccggcacgcccggcatgatgtccctcccgtctcttgcgcgcgcctccgcg
ccggccacgcccggcatgatcagctacgactccgaccgagtggacacgaccaacaccgtc
gccggcggcgtgatgtcgacggacgagccatggaccaccgagggcatcgaagtgcgcgtg
agcgacgcctaccgcggcgggcagtacagccaagctagcgccgtcatcacctcggccggc
cgcgactcatgtcgggtcaccgtgcgcgacagagacggcaacgacctggagtcgctctcc
ataccttccccctacctcgaacccgtggtgcccgccaagaaggaccgcgtcaaggtcatc
cgcggcgagctcaagggtaacgtcggcctcctcgtcggaatcgacggcagtgacggtatc
gtgaagatggagcccaatctcgacatcaagcttctcgccctccctctcctcgcccgctat
caccaccgtaaatag
DBGET
integrated database retrieval system
