Acanthamoeba castellanii: ACA1_093880
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Entry
ACA1_093880 CDS
T02667
Name
(RefSeq) splicing factor, CC1like subfamily protein
KO
K13091
RNA-binding protein 23/39
Organism
acan
Acanthamoeba castellanii
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acan03041
]
ACA1_093880
Spliceosome [BR:
acan03041
]
Common components
Common spliceosomal components
General mRNP proteins
ACA1_093880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RRM_Nup35
RRM_5
Nup35_RRM_2
RRM_3
RRM_Rrp7
RRM_9
RSRP
Motif
Other DBs
NCBI-GeneID:
14913150
NCBI-ProteinID:
XP_004334854
UniProt:
L8GKW6
LinkDB
All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MADDLDVEALLEASLKSTQTHKDAPQQEASSSSEVSKNGSAHDKVSRSEKESKSDSKDDK
HRKRRSKSRSRSRDRHRHKRRRHSRSRSRDRRSRRSRSRSRSPRGRDRRDRDRGRDRDSD
RDRDRDRDRDRRRDRDRRGAGKDDEILTPEEQERRRKQKEAEEADRDERTVFASNLPIRA
SESELFEFFGKAGKVHDIRLITDRNSRKSKGFGYIEYLDKSSVPLALHQLNGTQCKGQTV
LVQITQAEKNRAAAAAAAAAANAPPSLSAPTRLYVGNLHTDLAEDDLRTVFEPFGDIQQI
NLHIDPETGRSKGFAFVQYKSPEDAKKALQHCNGMELAGRQLKVGIVSDPGTLTAGGPGA
GLGGPIGFGGGGAFGGGGGFGGGGFGGGGGGLNELDDEGGGLGLNAQSRAMLMARLAGQT
GGAGFPSLPGAPMGFHGMTPAGLGLLPGVLPGLGMPGMPGLPSALGGLGAPSPLLPTAGA
MPMPTPIIPPTVAPRPVVASAFMLLKNMFDPAQETEPNFHLDIQEDVTEECSKYGKVLQC
HVVRDSPSGLVYLRFESSEGAAKAIQALNGRWFAGKVISAEFIDENTFAAGCKL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatctcgatgtggaggcccttcttgaggcttctctgaagtccacacagaca
cataaggatgcgccgcagcaagaggcatcttccagctcagaggtaagcaagaatggatct
gcacacgacaaagtgagtagaagtgagaaggagtccaaatccgactccaaggacgacaaa
caccggaagagaaggtctaaatcgcgtagcaggtcccgcgaccgtcataggcacaagcgc
aggaggcattcacgttcccggtcgcgcgatcgccgttcgcgtcgttcgcgctctcgctct
cgctcaccccggggaagagacaggagggaccgtgacaggggcagagaccgggacagcgac
cgtgatcgcgacagggaccgagaccgcgatcgcaggcgagacagggatcgtcgtggcgca
ggtaaagatgacgagatactcactcccgaagagcaggaacggaggaggaagcaaaaggag
gccgaggaggccgatcgggacgagcgcaccgtgttcgcgtccaatcttcccatccgcgcg
agtgagtcggagctcttcgaattcttcggcaaggctggcaaagtgcatgatatccgtttg
attacggatcgcaactcgcgaaagtcgaagggctttggctacatcgagtacctcgacaaa
tcctctgttccccttgcgctgcatcaacttaacggcacccaatgcaagggacagacggtg
ctggtgcagatcacccaagccgaaaagaatcgcgccgctgcagcggctgcggcagcggcg
gccaacgctccaccgtccctctctgcgcccacgcgtctttacgtgggcaatctgcacacc
gatctcgcggaggacgacctgaggacggtcttcgagccgttcggcgacatccagcagatc
aatctgcacattgaccccgaaacgggccgctcgaagggctttgccttcgtacagtacaag
tcgcccgaggatgccaagaaggcgctgcagcactgcaatggaatggagctcgcggggcga
cagctgaaggtgggcatcgtctccgatccaggcaccctcaccgcgggcggacccggtgcc
ggcctcggcggtccgatcggcttcggaggcggtggagcctttggcggcggcggcggcttc
ggaggtggcggcttcggaggcggcggcggcggcctcaacgagctggacgacgaaggcggc
ggtctgggcctcaacgcccaatcgcgcgccatgctgatggcccggctcgcgggccagacg
ggcggggccggctttccctcgctccccggtgcgccgatgggcttccatggcatgaccccg
gccggcctgggtctcctgcccggcgtcctgccgggtttgggcatgccgggcatgcccggt
ctgccgtctgcgctcggcggattgggcgccccctctccgctcctgcccacggccggcgcc
atgcccatgcccactccgatcatcccgccgaccgtcgctcctcggcccgtcgtggcctcg
gccttcatgctcctcaagaacatgtttgatcccgcacaggaaacggagcccaacttccac
ctggacatccaggaggacgtgacggaggagtgcagcaagtacggcaaggtgctgcagtgc
cacgtcgtacgggattccccctcgggtctggtctacctcaggttcgaatcttccgaagga
gcggccaaggcgatccaagcgctgaacggtcgttggttcgctggcaaggtaatctcggcc
gagttcatcgacgagaacaccttcgccgccggctgcaagctgtga
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