KEGG   Acanthamoeba castellanii: ACA1_097170
Entry
ACA1_097170       CDS       T02667                                 
Name
(RefSeq) LSM domain containing protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
acan  Acanthamoeba castellanii
Pathway
acan03018  RNA degradation
acan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ACA1_097170
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACA1_097170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_097170
   03041 Spliceosome [BR:acan03041]
    ACA1_097170
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     ACA1_097170
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     ACA1_097170
Spliceosome [BR:acan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    ACA1_097170
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 14913247
NCBI-ProteinID: XP_004335046
UniProt: L8GJY2
LinkDB
Position
Unknown
AA seq 131 aa
MLVELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDE
VIDMVQENAPIPKQGAAARGRGRGRGGPRGGRGRGEGGDRGGRGDYRGGRGRGDGGGYRG
GRGGGRGRGGV
NT seq 396 nt   +upstreamnt  +downstreamnt
atgctggtggagttgaagaacggagagacgtacaatgggcacctggtgaactgcgacgga
tggatgaacatcaacttgcgcgacgttatctgcacatccagagatggagagagattttgg
aggattcctcagtgctatattcgtggaaacactatcaagtacttgtgcatacccgatgag
gtgatcgacatggtgcaggagaacgcgcccattcccaagcagggcgccgcggctcgaggt
cgtggccgtggtcgcggtggtccgcgtggcggtaggggccgtggcgagggcggcgaccga
ggcggccgcggcgattaccgaggcgggaggggccgtggcgacggtggcggctaccgaggc
ggccgaggtggtggccgtggcaggggaggggtctag

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