Acanthamoeba castellanii: ACA1_097170
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Entry
ACA1_097170 CDS
T02667
Name
(RefSeq) LSM domain containing protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
acan
Acanthamoeba castellanii
Pathway
acan03018
RNA degradation
acan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ACA1_097170
09123 Folding, sorting and degradation
03018 RNA degradation
ACA1_097170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_097170
03041 Spliceosome [BR:
acan03041
]
ACA1_097170
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
ACA1_097170
mRNA degradation factors
5'-3' decay
Lsm complex
ACA1_097170
Spliceosome [BR:
acan03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
ACA1_097170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
14913247
NCBI-ProteinID:
XP_004335046
UniProt:
L8GJY2
LinkDB
All DBs
Position
Unknown
AA seq
131 aa
AA seq
DB search
MLVELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDE
VIDMVQENAPIPKQGAAARGRGRGRGGPRGGRGRGEGGDRGGRGDYRGGRGRGDGGGYRG
GRGGGRGRGGV
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgctggtggagttgaagaacggagagacgtacaatgggcacctggtgaactgcgacgga
tggatgaacatcaacttgcgcgacgttatctgcacatccagagatggagagagattttgg
aggattcctcagtgctatattcgtggaaacactatcaagtacttgtgcatacccgatgag
gtgatcgacatggtgcaggagaacgcgcccattcccaagcagggcgccgcggctcgaggt
cgtggccgtggtcgcggtggtccgcgtggcggtaggggccgtggcgagggcggcgaccga
ggcggccgcggcgattaccgaggcgggaggggccgtggcgacggtggcggctaccgaggc
ggccgaggtggtggccgtggcaggggaggggtctag
DBGET
integrated database retrieval system