Acanthamoeba castellanii: ACA1_113910 Help Entry ACA1_113910       CDS       T02667                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism acan  Acanthamoeba castellanii Pathway acan03018   RNA degradation Brite KEGG Orthology (KO) [BR:acan00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     ACA1_113910  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:acan03019]     ACA1_113910 Enzymes [BR:acan01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      ACA1_113910 Messenger RNA biogenesis [BR:acan03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      ACA1_113910   mRNA degradation factors    3'-5' decay     Ski complex      ACA1_113910 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk DEXQc_Suv3 Helicase_C CCD97-like_C Motif Other DBs NCBI-GeneID:  14920885 NCBI-ProteinID:  XP_004342155 UniProt:  L8H4E3 LinkDB All DBs Position Unknown AA seq 1345 aa AA seqDB search MEEVLLHLESLEKKTKKAGDASSGLMADLLPVGSSRVGEVEAHFPALQDDATHPLPLSVV DTYFDLSNAFLSDTERTYDRRAKAGDEATEEKYARMWARPMERAPFHLEPSRPHTTIKVA TDKLGSAGRMWKEVPVLETDTKATNSTSLLRAPASISDFTKGSSSNFPFMPGGMEREEPV PRPADHQGEAAAETTFDLDVVKLLSDALNGANLYTVAPGLDRGLNFDSSVSTSFSKILQD NVKAAEAAEEKIMADAQASAGALQSEPVEEAPAGQGLISFADIFVDDGIDPFRKAPGGEE EESEEESEEGEEEEEEEQGKEGKGKEKKDEAAKAKAPAAAAAGDEEADVDHLLGEDDLLS VLRRPTGAPRKRKDEWAIMDNSDVSNFEEIVPEMALEYPFDLDVFQKRAVCHLENGESVF VAAHTSAGKTVVAEYAIALASKHMTRTIYTSPIKALSNQKYRDFKETFGDVGLITGDVSI KPEASCLILTTEILRSMLYRGADLIRDVEWVIFDEVHYVNDIERGVVWEEVIIMLPDHVN LILLSATVPNTLEFADWIGRTKKKNIFVITTNKRPVPLEHYLWVSNERYKIVDNRSNFLM GGYQSAMQAAKQKQTKSAGATAKAARASGVKQQRTKWVKMIDQLRVKGLLPVVVFAFSKK KCEDVAHGLTSTDLTTSVEKHEIHVFMEAALDRLKGPDRKLPQVLRIKDLLKRGIGVHHG GLLPIIKEMVEILFGRGKIKVLFATETFAMGVNMPARTVVFENVQKHDGRAFRELHAGRR GLDTVGTVIIMTKEDKFPPSAGLQTMILGKPQKLESQFRLTYNMILNLLRVEDFKVEDMM KRSFSEFFTQRTLPQQRQKLILDEAKLSGLQDLECLFGEPDIENYYQLASQKKQLDAECQ RTIMASKVAQAALGAGRVVWISTAKYPINTVALIIGSKKAPAAPKSTAAASRDAFFEDTP AEPVVPEKIFRVLVVPDAGNDLYASAGGVPMAEAIEVTQSEIVEITSQRLKVEAGKLAPP GLDKKELASVTQQLIRLQESSVVVAPVPAGKGGPAPKGKKGGGGGGGGGGADKPLETLHP VRDFKINDLEFADKWMRRERMLERMKQSKCHTCPKLKEQYVAMEQRQKLVDEISELRRNL SNENLQLMPEFQQRVSVLRFLNYVDDNNAVQLKGRVAREINTVKDELIATELIFENALTE LPAEEIIALFSALVFELKTDVEVKLGGTLEEGRLKMLEIGERLFDIQTECGLDLSRHDYL KNLNFGLVEVVYEWARGMPFADITGLTDVAEGSIVRTIVRLDETCKEIKNAARIIGDSRL YVKMEEASRLVKRDIVFASSLYYDK NT seq 4038 nt NT seq  +upstreamnt  +downstreamnt atggaggaggtgctgctgcacctggagagtctggagaagaagacgaaaaaggcaggagat gcgtcttctggccttatggcagatctgctgccggtgggcagctcccgtgtaggcgaagtc gaggctcacttccccgccttgcaagacgatgccacccaccccttgcccctttccgtggtc gacacctacttcgacctctccaacgcgtttctctccgacaccgaacgcacctacgatcgc cgtgcgaaggcgggcgacgaggcgacggaggagaagtacgcgcggatgtgggcgcgcccg atggaacgcgctccgttccacctggagccctcgcggccccacaccaccatcaaggtcgcc accgacaagctcggctctgctggccgcatgtggaaggaggtgcctgtgctcgagacggac accaaggccaccaactcgacgtcgctcctgcgcgctccggccagcatctccgacttcacg aagggcagctcctccaacttccccttcatgccgggtggtatggagagggaggagcctgtg ccgcggcccgccgaccaccagggcgaggccgccgcggagacgacgttcgatctcgacgtg gtcaagctcctcagcgacgccctcaacggcgccaacctgtacaccgtggcgccggggctc gatcgcgggctcaacttcgattcgtcggtgagcacttcgttctccaagatcctccaagac aacgtcaaggcggctgaggcggcggaggagaagatcatggccgacgcgcaggcctcggcg ggcgccctgcagtccgagccggtggaggaggcgcccgcgggccagggcctcatctcgttc gccgacatcttcgtcgatgacggcatcgatcccttccgcaaagctcccggtggagaggag gaggaatcggaggaagaatcggaggagggcgaagaagaggaagaggaagaacaaggaaaa gaaggaaaaggaaaagagaaaaaggacgaagcggccaaggccaaggcgccggccgccgcc gccgcaggcgacgaagaagccgacgtggaccatttgctgggcgaagacgacctgctttcg gtgctccggcgccccacgggtgccccgaggaagcgcaaggacgaatgggccatcatggac aacagcgacgtctccaacttcgaagagatcgtacccgagatggcgctcgagtatccgttc gatttggacgtgttccagaagcgggcggtgtgccacctcgaaaacggggagagcgtgttt gtggcggcccacacgtccgccggtaagaccgtggtggccgagtatgccatcgccctcgcc tccaagcacatgacccgaacgatctacacgtcgcccatcaaggcgctgtccaaccaaaag taccgggacttcaaggaaacctttggcgacgtgggtctcatcaccggcgacgtctccatc aagcccgaggcctcctgcctcatcctcaccaccgagatccttcggtctatgctctatcgc ggcgctgatctcatccgagacgtggagtgggtcatcttcgatgaggtccactacgtcaac gacatcgagcgcggagtggtgtgggaggaagtgatcatcatgttgcccgatcacgtcaac ctcatcctgctatccgccaccgtgcccaacaccctcgaattcgccgactggatcgggcgg acgaagaagaagaacattttcgtgatcacgaccaacaagcggccggtgccgctggagcac tacctgtgggtgagcaacgagcggtacaagatcgtcgacaaccggtccaacttcctcatg ggcggctaccagtccgccatgcaggcggccaagcagaagcagaccaagtccgcgggtgct acggccaaggccgcacgagccagcggcgtcaagcagcaacgcacgaaatgggtgaagatg atcgaccaactgcgcgtgaagggactcctgcccgtcgtcgtcttcgccttctccaagaag aagtgcgaggatgtggcccacgggctgacgagcacggatctgacgacgtcggtggagaag cacgagatccacgtcttcatggaggccgcgctcgaccgcctcaagggtcccgaccgtaag ctgccgcaagtcctgcgcatcaaggacctcctcaagcgcggtatcggcgttcaccacggc ggcctcctccccatcatcaaagagatggttgagattctgttcggccgcggcaagatcaag gtcctgttcgccacggagacctttgccatgggcgtcaacatgcccgcccgcaccgtcgtc ttcgagaacgtacagaagcacgacggacgcgccttccgcgaactccacgccggaaggcgt ggtctcgacaccgtgggcacggtcatcatcatgaccaaggaggacaagttccctccgtcg gcggggctccagacgatgatcctgggcaagccccagaagctcgagtcgcagttccgcctc acctacaacatgatcctgaacctgctgcgtgtggaggacttcaaggtggaggacatgatg aagcgctccttctccgagttcttcacccagcgaacgctgccccagcaacgccagaaactg atcctcgacgaggcgaagctgtcggggctgcaggacctggagtgcctgttcggcgagccg gacatcgagaactactaccagctggcctcccagaagaagcagctcgacgccgagtgccag agaaccatcatggcctccaaggtcgcccaagcggcgttgggtgcggggagggtggtgtgg atctcgacggccaagtaccccatcaacaccgtggccctcatcatcggctccaaaaaggcc cccgccgcccccaagagcaccgccgccgcctcgcgcgacgccttcttcgaagacaccccg gccgagcccgtggtgccggagaagatcttccgggtgctggtggtgcccgacgccggcaac gacctctacgcgagcgcgggcggcgtgccgatggcggaggcgatcgaggtgacgcagtcg gagatcgtggagatcaccagccagcggctcaaggtcgaggccggcaagctcgcgccgccg gggctcgacaagaaggagctggcctcggtcacccagcagctcatccgcctccaggagagc tccgtcgtcgtcgcgcccgtacccgccggcaagggcggccccgctcccaagggcaagaag ggtggtggcggtggcggtggcggtggtggcgcggacaagccgctggagacgctgcatccg gtccgcgatttcaagatcaacgacctcgagttcgccgacaagtggatgcgccgggagcgg atgctggagcggatgaagcagtccaagtgccacacgtgtcccaagctcaaggagcagtac gtggcgatggagcagcgccagaagctggtcgacgagatctccgagctgcggcgcaacctc tccaacgagaacctccagctcatgcccgagttccagcagcgcgtgtccgtcctgcgcttc ctcaactacgtcgacgacaacaacgccgttcagctcaagggccgcgtcgctcgcgagatc aacacggtgaaggacgagctgatcgcgacggagctgatctttgagaacgcactcacggag ctaccggcggaggagatcatcgccctcttctcggccctcgtcttcgaactcaagaccgac gtcgaggtcaagctcggcggcaccctcgaagaagggcgcttgaaaatgctggagatcgga gagcggctgttcgacatccagaccgagtgcggcctggatctcagcaggcacgactacctc aaaaatctcaacttcggcctcgtcgaggtcgtctacgagtgggctcgcggcatgccgttt gcggacattacggggctgacggacgtggccgagggttcgatcgtgcgtacgattgtgcgg ttggacgagacgtgcaaggagatcaagaacgcggcgcgcatcatcggcgactcgcgcctc tacgtcaagatggaggaggcctcccgcctcgtcaagcgcgacatcgtcttcgcctcctcc ctctactacgacaaatga

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