KEGG   Acanthamoeba castellanii: ACA1_149460
Entry
ACA1_149460       CDS       T02667                                 
Name
(RefSeq) LSM domain containing protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
acan  Acanthamoeba castellanii
Pathway
acan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACA1_149460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_149460
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     ACA1_149460
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     ACA1_149460
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 14923737
NCBI-ProteinID: XP_004351555
UniProt: L8HDE1
LinkDB
Position
Unknown
AA seq 135 aa
MNQDALAEVDDFTFLPGTVSLVEEVDHRILVVLQDGRKLLGVLRSFDQYANLVLEQTIER
IYVGEQYAEKNLGLFLVRGDNIVLLGPIDESREELCVKGLTKVTLPEIEAARKAEREAKR
AQWELKQKMNQDPWS
NT seq 408 nt   +upstreamnt  +downstreamnt
atgaaccaggacgcccttgctgaggtcgatgacttcactttcctgccgggcaccgtgagc
ctggtagaggaggtagaccacaggatccttgtcgtgctccaggatggacgcaaactgctg
ggcgtgttgcgctcttttgatcaatacgccaatcttgtactggagcagaccatagagcgc
atttatgtgggcgagcagtatgccgaaaagaatcttgggctcttcctcgtgcggggcgac
aacatcgtgcttcttggacccatcgatgagagtagagaggagctgtgcgtgaagggcctc
accaaagtgacgttgcctgagatcgaggcggcgcgaaaagcagagagggaggcaaagagg
gcacagtgggagctcaagcagaaaatgaatcaggacccctggtcttaa

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