KEGG   Acanthamoeba castellanii: ACA1_171650
Entry
ACA1_171650       CDS       T02667                                 
Name
(RefSeq) exosome component 7, putative
  KO
K12589  exosome complex component RRP42
Organism
acan  Acanthamoeba castellanii
Pathway
acan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACA1_171650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_171650
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     ACA1_171650
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     ACA1_171650
SSDB
Motif
Pfam: RNase_PH RNase_PH_C ABC_trans_aux
Other DBs
NCBI-GeneID: 14925602
NCBI-ProteinID: XP_004356481
UniProt: L8HJN9
LinkDB
Position
Unknown
AA seq 263 aa
MFGLSSAERQFLIDGVELNVRNDGRSRLDFRHFTIETGIIATANGSARLKLDNTDVMVGV
RVDLAEPKLDRPNEGAEDLAISITQVLARSYKNALDWTSLCVIPGKLVWAIYVDALVLDF
EGNPYDAISIATRAALHNTMIPRITLEDGEVEVTDDPQDCTRLDVSNVPVTVTLTKIGTR
FLVDATLEEEQCMGVRVIVGISPKGHVCSMQMTGHGAVEPTSLYEMIQTSQKLGRELIEG
LDKALAQEAKSALPKTSTSAYFN
NT seq 792 nt   +upstreamnt  +downstreamnt
atgtttggcctttcgtcagcggaacgacaatttttgattgatggagtggagctcaacgtt
cgaaatgacgggcgctcgcggctcgatttccgacatttcaccatcgaaacgggcatcatc
gccaccgcaaacggctccgctcgtctcaaactggacaacaccgacgtaatggtgggcgtt
cgggtggatttggccgagcccaagcttgatcgacccaatgaaggtgctgaggatttggcg
atttccatcacacaagttctggcccgttcctataagaacgctttggattggacgtcgctc
tgcgtcatcccgggcaagctggtgtgggccatttacgttgatgctctcgttctggacttc
gagggcaacccctacgacgctatctcgatcgctactcgagcagctctgcacaatacaatg
attccacgaatcacgctggaggacggagaagtcgaggtaacggacgacccacaagattgc
acgcgactagacgtgtcgaatgtgccggtcaccgtgaccctcaccaagattggaacacga
ttcctggtcgatgctactctggaggaagagcagtgcatgggcgtgcgggtgatcgttggc
atctcccccaaaggccatgtgtgttcgatgcaaatgaccggccacggtgctgtcgagccg
acttccctttatgagatgatccagacttcccaaaagctgggccgagagctcatcgagggc
ctcgacaaggcactcgcccaggaggccaagtctgcgctccccaagacaagcacctccgct
tacttcaactga

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