Acanthamoeba castellanii: ACA1_204120 Help Entry ACA1_204120       CDS       T02667                                  Name (RefSeq) RNA polymerase Rpb1 protein Organism acan  Acanthamoeba castellanii SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_2 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 PUB BUD22 Motif Other DBs NCBI-GeneID:  14916983 NCBI-ProteinID:  XP_004338368 UniProt:  L8GTL5 LinkDB All DBs Position Unknown AA seq 1699 aa AA seqDB search MGEPKFRKVKKAHPAFERRIGSVPRAKAAFHLLGWQDGPKGTEDEEFYVLEVTPANQEAV EKRLHFARGELERIKQELLQSGPRFIDPAATTAPQGGDGTGVTELGQLFPHLEGVRFRLP ADWVFIKVEPTRGLAVFKSLELNLGVVLNYLPQPLQRAWLDEASLDFYRHNLRLHAAHNK GGYVAGITKRAQPEDFYTAEEIKKISVKRILTTASLDVLGNPIPGGLYDPAMGPINRFET CATCGLGERDCPGHIGHIELAVPVYNPMMFKQLVRILRAKCFECHQLRLSRDKVNRLAKS LSLLDEGKIVEALDVDNYYLHRDWCAEQLKETASTDGPKPSRKVLANLTALRKYAQETLE KIKTEEEAYDNAHQGIHNQSVDELFKAKSSRTQEFRRALVELLHAVPKVCENCKSKSPNI RGDRKEKIFKTTLASTAKAVNKMVASSNAAKTAAAQKKKGKEEAEKADKSKKKAKKTDEE AGSDDDDDKSDSDDSDDDSDEGSDDDDEEKSASEEEQAEEVVKKAKKPAAKSSSKVKYMA PSEVLDHIKKLYAAEEKIMRLAFGSIRLSHNLPAHRAADPMVYFLETVAVPPSRFRPLNM VNGMAMDHPQNIYLARIMTYNDQLLTAKTDKGEMTVEQRVELWISMQKTVNALFDSSNAG VGAAAGIKQLLEKKEGLFRKHMMGKRVNFAARSVISPDPFLQTNEIGIPLVFAMKLTFPE PVTETNFREMQQAVMNGPGKYPGANAVIDENGHTTVLRESDEAGRLALSKTLRNNEKGLV KVLRHLRDGDAVLVNRQPSLHKPSIMAHIVRVLRTEKTIRMHYANCDAYNADFDGDEMNI HFPQSDLARAEAYTIALGDEQYIVPTDGSPLRGLIQDHVVMGSLLTNKDTMLTREEFQQL LYAAISTLPPTRGSAHLRYQTPIITIPPCIVKPVPLWSGKQVISNLLMELLKGYQPLNLD SSSKIPAASWKDHSEEGIVIVRGNELLTGILDKSQFGASAYGLVHATYELYGSKKAGELL SALGRLFTFYLNTVAFTCGIDDMLINNEFDSVRQGLLRKANNSGYEVASEFLGYSSTDKV DRPEVRQGLGQAVRDPDEATTWDNLMKKQMSSMTTDIIKETMKGQVKKFPWNNLTLMTTS GAKGSMVNVSQICCLLGQQELEGKRVSSMISGKTLPSFEPHEAEGRAGGYIADRFLTGIR PQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLESLRVCYDATVRDSDASVIQFNYG EDSIDITKSKHLERFSFLSKNTPALVQKYYLTAARQALQTKPTKRYLKKRAKNAKLNEES TLQSEFETFLHLGAVSERYQEKLEKRVRLSDGDINQAMSGENDDAEDPTTQRKSTRNEED ESAALGKERSRKQEHASYDDAEEEELREVADAGRKQKHSVDSSLSEMKTRLKGKQDDDEQ TTGKSAGPQKVAPVKATTRASPSKPRKVLLGSDEILKDYRFDHKRMLVEVEVKVGMADKK LLMISLVEALVANFVVKQVDGIKRAFVIPPPNGQTKYAVQTEGVNFGIIAQFADVVDLSG VRSNDIYAVLTTFGVEAARRSIADEINGVFKVYGIGVDHRHLAIIADYMTFEGGYKPFNR AGMNMSTSPYQKMSFETTTVFLADATMRGDWDPISNASASLVLGKVVEGGTGCFELLQPL ILPTQPATSTGDDADAMSE NT seq 5100 nt NT seq  +upstreamnt  +downstreamnt atgggcgagcccaaattccgaaaggtcaagaaggcacacccggcctttgagcgaaggatc ggatctgtgccgcgcgccaaggctgcatttcatctgttggggtggcaggacggacccaag ggcacagaagatgaagaattctacgtgctcgaggtcacaccagccaaccaagaggccgtg gagaagcgattgcactttgccagaggcgagctcgagcgtatcaagcaggagctgctgcag agtggtccgaggttcatcgaccctgcagcaaccaccgccccgcaaggcggcgacggcacg ggcgtgaccgagctgggccagctcttcccacacctcgaaggcgttcgcttcagactgccg gccgactgggtcttcatcaaggtggagccaacgcgtggccttgccgtgttcaaatcgctg gagctgaacctgggcgtggtgctcaactacctaccgcagccgttgcagcgcgcgtggctc gacgaggcctctcttgacttttaccgtcacaacctgcgactgcacgccgctcacaacaag ggaggatatgtggccggcatcaccaagcgggcacagccggaggacttctacacggcggag gagatcaagaagatcagtgtcaagcggatcctcaccaccgcctcgctcgatgttctcggc aaccccattcccggcggtctctacgatcctgctatgggtcccatcaacagatttgaaaca tgcgctacctgcggcctgggcgagcgtgactgccccggacacatcggacacattgagctt gccgtgccggtgtacaatcccatgatgttcaagcagctcgtgcgcatcctgcgcgccaag tgcttcgagtgccaccagcttcgcctgtcgcgggacaaggttaacagactggccaagtcg ctgagcctgctcgatgagggcaagatcgtggaggcgctcgatgtggataactactacctc caccgtgattggtgcgccgagcagctcaaggaaaccgcatcgaccgatggcccgaagccg agcaggaaggtgctggccaacctgaccgcgctgcgcaagtatgctcaggagacgctcgag aagatcaagaccgaagaggaggcctacgacaacgcccatcagggcattcacaaccaatct gtcgacgagctcttcaaggccaagagctcgcgcacccaggagttcagacgcgcgctggtc gagctcctgcacgctgttcccaaggtctgcgagaactgcaagagtaagagcccgaacatc cgcggcgacaggaaagagaagatcttcaagaccacgctcgccagcacggccaaggccgtc aacaagatggtcgccagcagcaacgccgccaagactgcagctgcgcaaaagaagaagggg aaggaggaggcggaaaaggccgacaagagtaagaagaaggccaagaagactgacgaggaa gccggcagcgatgacgacgacgacaagagcgacagtgacgatagtgacgacgacagcgac gagggcagcgatgacgacgacgaggaaaagagcgctagcgaggaggagcaagcggaggag gtggtcaaaaaggccaagaagcccgccgccaagtcatcctccaaggtcaagtacatggcg ccgagcgaggtgcttgaccacatcaagaagctgtacgccgccgaggagaagatcatgcgg cttgccttcggctccattcgcctcagccacaacctgcccgcccaccgggccgcggacccg atggtctacttccttgagaccgtcgccgttcctccctcgcgcttccgtcctctcaacatg gtgaacggaatggccatggaccacccgcaaaacatctacctcgctcgcattatgacctac aacgaccagctgctgaccgccaagaccgacaagggcgagatgaccgtggagcagcgagtc gagctctggatctcgatgcagaagaccgtgaacgcgctgttcgatagctcgaacgctggc gttggtgcggcggccggtatcaagcagctcctggagaagaaggagggtctcttccgtaag cacatgatgggcaagcgcgtcaacttcgccgcgcgttccgttatctcgcccgatcccttc ctccaaaccaacgaaatcggcattccgctggtgttcgcgatgaagctcaccttcccggag ccggtcacggagacgaacttccgagagatgcagcaggcggtgatgaacggccccggcaag taccccggcgccaacgccgtcatcgacgagaacggtcacacgacggtcctgcgcgagagc gacgaggcgggccggctggcgctgtccaagaccctgcgcaacaacgagaagggactggtc aaggtgctgcgtcacctccgcgacggcgacgccgtgctggtcaaccgacagccctcgctg cacaagccctcgatcatggcccacatcgtgcgcgtcctccggaccgagaagaccattcgc atgcactacgccaactgcgatgcctacaacgccgatttcgacggtgacgaaatgaacatc catttcccgcagagcgacttggcgcgcgctgaggcctacacgatcgcgttgggcgatgag cagtacatcgtaccgaccgacggcagcccgctccgtggtctcatccaggatcacgtggtg atgggctcgctgctcaccaacaaggacaccatgctcacgcgcgaggagttccagcagctc ctctacgccgccatctccacgctcccgcccacgcgcggctcggcccacctccgctaccag acgcccatcatcaccatcccgccctgcatcgtcaagcccgtgcccctgtggtccggcaag caagtgatcagcaatctgctgatggagctgctcaagggctaccagccgctcaacctggac agcagctcgaagatcccggcggccagctggaaggatcactcggaggagggcatcgtcatc gtgcgcggtaacgagctcctcaccggcatcctcgataagtcgcagttcggtgcctcggcg tatggtcttgtccacgccacgtacgagttgtacggttcgaagaaggcgggagagctgctg agcgcactcggccgtctcttcaccttctacctcaacaccgtcgccttcacctgcggtatc gacgacatgctcatcaacaacgagtttgatagtgtgcggcaggggctgctgcggaaggcc aacaacagcggttacgaggtggcctctgagttcctgggctattcgagcacggacaaggtc gaccggccggaggtgcggcagggcctgggccaggccgtgcgcgaccccgacgaggcgacg acgtgggacaacctcatgaagaagcagatgtcgtccatgaccacggacatcatcaaggag acgatgaagggccaggtcaagaagttcccctggaacaacctcactctcatgaccacctcc ggtgccaagggctccatggtcaacgtgtcgcagatttgctgtctgctcggtcagcaggag ctcgagggcaagcgtgtgtcgtcgatgatcagcggcaagacgctgccgtcgttcgagccc catgaggccgagggtcgcgccggcggctacatcgccgatcgtttcttgaccggcatccgc ccgcaggagttcttcttccactgcatggccggccgagagggtctgatcgataccgccgtc aagacctcgcgttcgggctacctccagcgctgtctcgtcaagcacctggagtcgctgaga gtgtgctacgatgccacggtgcgcgattcggacgcgtcggtgattcagttcaactacggc gaggactcgatcgatattaccaagagcaagcacctcgagcgcttctccttcctctccaag aacacgcccgcgctcgtccagaagtattacttgacggcggccagacaagcgcttcagacc aagcccaccaagcggtacctcaagaagcgggcgaagaacgccaagctcaacgaggagtcc acgctccaatccgagttcgagaccttcctccacctgggtgccgtgtccgagcgctaccag gagaagcttgaaaagcgggtgcgactctcggacggggacatcaaccaggcgatgagcggc gagaacgacgacgcggaggaccccaccacccagcgcaagagcacgcgcaacgaggaggac gagtcggccgcgctcggcaaggagaggagccgcaagcaggagcacgcctcctacgacgac gccgaagaggaggagctgagggaggtggcggatgccggtcgcaagcagaagcacagcgtc gactcgtcgctgtcggagatgaagaccaggctcaagggcaagcaggacgacgatgagcag acgactggcaagtccgctggacctcagaaggtcgcgcccgtcaaggccactacgcgcgcc tcgccgagcaaaccgcgcaaggtgcttctcggcagcgatgagatcctcaaggactacaga ttcgaccacaagcggatgctggtggaggtcgaggtgaaggtgggcatggccgataagaag ctgctcatgatctcgttggtggaggctctcgtcgccaacttcgtcgtcaagcaggtcgac ggcatcaagcgagccttcgttatcccgccaccgaatggccagaccaagtatgcggtccag acggagggcgtgaactttggcatcatcgcccaattcgccgatgtggtcgacctcagcggg gtgaggtccaacgatatctacgccgtactcaccacctttggcgtcgaagctgcccgccgt tccatcgccgacgaaatcaacggcgtgttcaaggtctacggtattggagtagatcaccgt cacttggcgatcatcgccgactacatgacgttcgagggcggctacaagcccttcaaccga gctggcatgaacatgtccacgtcgccctaccagaagatgtccttcgaaaccaccaccgtc ttcctcgccgacgccaccatgcgaggcgactgggacccgatctccaacgcttcggcatcg ctggtgctgggaaaggtggtagagggcggcacgggctgcttcgagctcctccagcccctc atcctccccacgcaaccggccacctcgaccggcgacgacgccgacgccatgagcgagtag

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