Acanthamoeba castellanii: ACA1_204440
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Entry
ACA1_204440 CDS
T02667
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACA1_204440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_204440
03041 Spliceosome [BR:
acan03041
]
ACA1_204440
03009 Ribosome biogenesis [BR:
acan03009
]
ACA1_204440
03016 Transfer RNA biogenesis [BR:
acan03016
]
ACA1_204440
Enzymes [BR:
acan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACA1_204440
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ACA1_204440
Spliceosome [BR:
acan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ACA1_204440
Complex C
U4/U6.U5 tri-SnRNP related factors
ACA1_204440
Ribosome biogenesis [BR:
acan03009
]
Eukaryotic type
Pre-60S particles
Helicases
ACA1_204440
Transfer RNA biogenesis [BR:
acan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ACA1_204440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
RhlB
Motif
Other DBs
NCBI-GeneID:
14916985
NCBI-ProteinID:
XP_004338370
UniProt:
L8GTU3
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MEMDKQIKNDKREEQPSKEQADPNLRSYVACKHEVSIPVGFEVPGGEEGMRELMNPPDPV
NPVRKYPFTLDPFQRLSIACLERGDSVLVSAHTSAGKTVVAEYAIAMGLRDKQRVIYTSP
IKALSNQKYRELLEEFKDVGLMTGDVTINPSASCLVMTTEILRNMLYRGSEVMREVAWVV
FDEIHYMRDLERGVVWEETLILLPDKVRYVFLSATLPNAIEFTDWIASLHHQPCHVVYTD
YRPTPLQHYIFPAGGDGLFLVVDEKSTFREDNFQKALAVLAAGEATSSGQRGGGRAGGGK
GHRDGSRGGNRRNTGSDCYKIVKMIMERNYQPVIVFSFSKKDCEGMALQMSKLDLNTDDE
KKLVESVFFNAIDSLSDDDKKLPQVEHILPLLKRGIGIHHGGLLPILKEVIEILFQEGLL
KCLFATETFAMGLNMPAKTVVFTNVRKFDGSQFRVISSGEYIQMSGRAGRRGLDDRGIVI
MMVDEKMEPQTAKGMLMGKADALNSSFHLGYNMLLNLLRVEGVDPEYLIKKSFHQFQSDK
SLPMKEKKLLDLEEKVKREMAVQGEEIVEEYYLLREQLQKLKRVFTDTMNQPIYCLPFLQ
PGRLVRVTEGKNEWGWGVVVNFQKKAGHDDRGMGSGGHYIVDVLLKCAPADTNQKLFTPK
PCPPGQEGQIEVVPVLLPLIDGISSVRVYVPKDLRTPDARKSVGKTLAEVHKRFNDGVPL
LDPIEDMHIEDDNFKKIIRKIEMLEDRLNSNPAFKEPSLEQRYALYVKKMDAENEIKLLR
KQIKSSEGIVLKDQLKCMKRVLRRLGLTNKDNIIEVKGRVACEISSADELVLTELIFTGV
LNDLNVEQIVSLMSCFVFEEKSESAQRLADELAGPLRSLQDAARKIATISQECKLPMEVE
DYVEKFKPHMMDIVYAWCKGAKFADICKMTNIFEGSIIRTMRRLEELLRQLCSASKAIGN
TELEAKFAEGINKIKRDIVFAVSLYL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacaagcaaattaagaatgataaacgcgaagagcaaccatcgaaggagcag
gctgacccaaatctgcgatcctacgttgcatgcaagcacgaggtgtcgatcccggtcggc
ttcgaggttccaggcggtgaggagggcatgcgagagttgatgaatcctcccgatcctgtc
aaccccgtccgcaagtaccctttcaccctcgatcccttccagcgcttgtccatcgcctgc
ctcgagcgcggcgattccgtgctggtgtcggcccacacgtcggccggtaagaccgtggtg
gccgagtacgccatcgccatgggcttgcgcgacaagcagcgagtcatctacacatcgccc
atcaaggccctttccaaccagaagtatcgcgagcttctggaggagttcaaggacgtgggc
ctcatgacgggcgacgtcaccatcaacccatcggccagctgtctcgtgatgaccaccgag
attctccgtaacatgctctaccgcggctccgaggtcatgcgcgaagtggcctgggtcgta
ttcgacgagattcactacatgcgcgatctcgagcgtggcgtggtgtgggaagagaccctc
atccttcttcctgacaaggtgcggtatgtgttcttgtcggcgacgctgcccaacgccatc
gagttcacggactggatcgcctcgctgcatcaccagccgtgtcacgtcgtctacaccgat
taccgtcccactccgctccagcactacatcttccctgctggcggagacggcctcttcctc
gtcgttgatgagaagtcgaccttcagagaggacaacttccagaaggctctcgcggtgctg
gctgcgggcgaagccacgtcgtccggccagagaggaggcggtcgagctggcggcggcaag
ggtcatcgcgacgggagccgcggtggtaacaggaggaacactggttcggactgctacaag
atcgtgaagatgatcatggagcgcaactatcagccggtcatcgtcttcagtttcagtaag
aaggactgcgagggcatggcgctgcagatgagcaagctcgacctcaacaccgacgacgaa
aagaagctggtcgagtcagtcttcttcaatgccatcgactcgctgtccgatgacgacaag
aaactgccgcaggtggagcacattctgcctttgctcaagcgcggtatcggcatccatcac
ggtggtcttctgcccatcttgaaggaggtcatcgagattctgttccaggagggactgctc
aagtgtctgtttgccacggagacgttcgccatgggtttgaacatgcctgccaagacggtc
gtgttcaccaacgtgcgcaagttcgacggctcgcagttccgtgtcatctcctcgggcgaa
tacattcagatgtcaggtcgtgccggtcgacgaggtctcgacgacaggggtattgtcatc
atgatggtcgatgaaaagatggaaccccaaactgccaagggcatgttgatgggcaaggcc
gacgctctgaactccagcttccacctgggctacaacatgcttctcaatctgctgcgcgtg
gagggcgtcgaccccgaatacctcatcaagaagtccttccatcagttccagagcgacaag
tcgcttcccatgaaggaaaagaagctgctcgacctggaggagaaggtcaagcgggaaatg
gctgtgcagggcgaggaaatcgtggaggagtactacctgttgcgagagcagctgcagaag
ctcaagcgagtgttcacggacacaatgaaccagcccatctactgcctccccttcctccag
cccggtcgtctcgtccgtgtcaccgagggcaagaacgaatggggctggggcgtcgtggtc
aacttccagaaaaaggcgggtcacgatgaccgaggcatgggtagcggggggcactacatc
gtcgacgtgctcctcaagtgcgcgcccgccgataccaaccaaaagctcttcacgcccaag
ccctgcccgcccggccaagagggtcagatcgaggtggtgcccgtgctgctgccgttgatc
gacggcatcagctcggtccgcgtctacgtgcccaaggacctgcgcacgcccgatgcgagg
aagagcgtgggcaagacgctggccgaggtgcacaagcgattcaatgacggcgtgcccctg
ctcgacccgatcgaggacatgcatatcgaggacgacaacttcaagaagatcatcaggaaa
atcgagatgttggaggaccgactcaacagcaaccccgccttcaaggagccgtccttggag
cagcgctacgctctctacgtgaagaagatggacgcggagaacgagatcaagctgttgagg
aagcagatcaagagctcggagggcatcgtgctcaaggaccagctcaagtgcatgaagcgc
gtgctgcggcggctgggcctcaccaacaaggacaacatcatcgaggtaaagggacgtgtg
gcgtgcgagatcagctccgccgacgagctcgtgctcacggagctcattttcacgggcgtg
ttgaacgacctcaatgtggagcaaatcgtgtcgttgatgagctgcttcgtgttcgaggag
aagtcggagtcggcccagcgactcgccgacgaactggccggcccgctgcggtcgctgcag
gacgccgcgcgtaagatcgctacgatctcgcaggagtgcaagctcccgatggaggtcgag
gactacgtcgaaaagttcaagccacacatgatggacatcgtctacgcctggtgcaagggt
gccaagttcgccgatatctgcaagatgaccaacatctttgagggaagcatcatccgtacg
atgaggcgcctggaggagttgctgcggcagttgtgttcggcgtccaaggccatcggcaac
accgagctcgaggccaagttcgcggagggcatcaacaagatcaagagggacatcgtcttc
gccgtctcgctctacctctag
DBGET
integrated database retrieval system
