KEGG   Acanthamoeba castellanii: ACA1_249770
Entry
ACA1_249770       CDS       T02667                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
acan  Acanthamoeba castellanii
Pathway
acan03013  Nucleocytoplasmic transport
acan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ACA1_249770
  09122 Translation
   03013 Nucleocytoplasmic transport
    ACA1_249770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_249770
   03041 Spliceosome [BR:acan03041]
    ACA1_249770
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     ACA1_249770
Spliceosome [BR:acan03041]
 Complex C
  Other components
   EJC/TREX
    ACA1_249770
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ACA1_249770
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 14924096
NCBI-ProteinID: XP_004352651
UniProt: L8HEE4
LinkDB
Position
Unknown
AA seq 466 aa
MNYEQTKRFLLTSLRRADASNDLEKAKTAILADLKELHIKKQKPEQPSAAASASAPTTAA
AGASSSSTTDQDVKDILDYALQQRHDKGEGSGGGSKMEVEGTPAATTRKYEDVGLLIDIA
LWLGREKVIESAAPLELVRDFFLSHTIEECQQFFALLEDRADQLSRAIIGDSRANNTLLR
ALSEVRKRLSRTNDLVFAGRILMFMAYAFPLSDKSGVNLKGEANVANVTTMDKEPSPALE
ETPEDIRDLQALLQKEERGRMVSLEEWLEPVIEEMDPEAAIESQYKKINTDKIYVWRAKR
LTFKRSLEYFCTLAKQDATLEDVAKQLLANKGTSTEDGMVLEDREEKRDADVDDVEDKES
VVKIEAKHSEDQEGDQLVSEPDSHDDDSKPPTKTTLEAGEVPTPQVEEEEGDDEKESEVG
EKRKEMPASPLKARDDASSPAVKKRRVANSPLLVTTPGEAKPTTPE
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgaactacgaacagactaaacgcttcttactgacaagcctgcgtcgcgcggatgcctcg
aatgacctcgagaaggccaaaactgccatcttggccgacctgaaggaactgcacatcaag
aagcagaagcccgaacaaccctctgccgctgcgtctgcatcagccccaacaactgcggct
gccggagcgtcttcgagtagtacgaccgaccaagatgtcaaggacattctcgactacgct
ctccagcaacgccacgacaagggcgagggtagcggtggcggtagcaagatggaagtcgag
ggaacgcctgccgcaacaactcgcaagtacgaagacgtcgggttgctgatcgatatcgcg
ctgtggcttgggcgcgagaaggtgatcgagtctgcggcaccgctggagttggtgcgcgat
ttcttcctgtcccatacgatcgaggaatgccagcagttctttgcgctgctcgaggatcgc
gccgatcagctctctcgggccatcatcggggattcgcgcgccaacaataccctcctgcga
gcgctctccgaggtccgtaagcggctctcccgcacgaacgacctcgtctttgccggtcgc
atcctgatgttcatggcctacgcgttccccctctccgacaagtcaggcgtcaatctcaag
ggtgaagcgaatgtggccaacgtcaccacaatggacaaggagcccagtccagccctcgaa
gaaacccccgaggacatacgagatctgcaggcacttctgcaaaaggaggagcgcggtcgc
atggtgtcgctcgaggaatggcttgagcccgtcattgaggagatggatcccgaggctgcc
atcgagtcccagtacaagaagatcaacacggacaagatctacgtgtggcgggcaaaacgt
ttgaccttcaagcgcagtctcgagtacttttgcacgcttgccaaacaggacgctactctc
gaggacgtggccaagcaactccttgccaacaagggaacttcaacagaagatgggatggta
ctggaggatcgtgaggaaaaacgcgacgccgatgtggatgatgtagaagacaaggagagc
gtcgtcaaaatcgaagccaagcacagtgaagatcaggaaggagaccaacttgtcagcgag
cccgacagtcatgacgacgacagcaagccgcccacgaagactaccctggaggcaggcgaa
gtaccgacaccccaggtcgaagaggaggaaggagacgacgaaaaggaaagtgaggtgggt
gagaagcggaaggagatgcccgcctcgccactgaaggcacgcgatgatgcctcgtcccca
gcggtgaagaagagacgagttgcgaacagcccacttctcgtgacgacacctggtgaggcc
aaacctacaacaccagagtga

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